MirGeneDB ID | Cpi-Mir-146-P2 |
Family name |
MIR-146 (all species) |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-146c
|
Paralogues |
Cpi-Mir-146-P1
Cpi-Mir-146-P4
|
Orthologues |
Aca-Mir-146-P2
Ami-Mir-146-P2
Cli-Mir-146-P2
Cmi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Mun-Mir-146-P2-v1
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Tgu-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (chrPic1) |
JH584586: 7426738-7426802 [+]
UCSC
Ensembl
|
Seed |
GAGAACU |
Precursor (pre-Mir +30nt flank) |
GAUGUGAUGAUCCAUAGCAGUUCCCAGCUCUGAGAACUGAAUUCCAUGGACUGGUUUCAGUUCUGUAUCUUCAGUCCAUGGUAGUCAGUUCUCUAGCUUGGCUGUAUCUAACUUCACAACUAGUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUGUGAUGAUCCAUAG----| UU C CU AUU GUUUCAGU
CAG CC AGCU GAGAACUGA CCAUGGACUG U
GUC GG UCGA CUCUUGACU GGUACCUGAC C
AUGAUCAACACUUCAAUCUAU^ -- U U- GAU UUCUAUGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-146-P2_5p |
mirBase accession | MIMAT0037778 |
Sequence |
0- UGAGAACUGAAUUCCAUGGACUG -23
Get sequence
|
Star sequence |
Cpi-Mir-146-P2_3p* |
mirBase accession | MIMAT0037779 |
Sequence |
43- GUCCAUGGUAGUCAGUUCUCUA -65
Get sequence
|