MirGeneDB ID | Mun-Mir-146-P2-v1 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
Mun-Mir-146-P1
Mun-Mir-146-P2-v2
Mun-Mir-146-P4
|
Orthologues |
Aca-Mir-146-P2
Ami-Mir-146-P2
Cli-Mir-146-P2
Cmi-Mir-146-P2
Cpi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Tgu-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Mun_miRNA_loci) |
146-P2-v1_LR594633.1:465518596-465518860: 101-165 [+]
|
Precursor (pre-Mir +30nt flank) |
AUUUGAUGAUUUUCUGGCAGUUCCCAGCUGUGAGAACUGAAUUCCAUGAACUGGUUCCAGCUUUUUGUCUUCAGUCCAUGGUAGUCAGUUCUCUAGCUUGGCUGUCUCUAUCUUCACAACUAGCC
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|
Structure | 10 20 30 40 50 60
AUUUGAUGAUUUUCUGG----| UU C U AUU A GUUCCAGC
CAG CC AGCUG GAGAACUGA CCAUG ACUG U
GUC GG UCGAU CUCUUGACU GGUAC UGAC U
CCGAUCAACACUUCUAUCUCU^ -- U - GAU C UUCUGUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mun-Mir-146-P2-v1_5p |
mirBase accession | None |
Sequence |
0- UGAGAACUGAAUUCCAUGAACUG -23
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|
Star sequence |
Mun-Mir-146-P2-v1_3p* |
mirBase accession | None |
Sequence |
43- GUCCAUGGUAGUCAGUUCUCUA -65
Get sequence
|