Mir-146-P1

MirGeneDB ID

Mun-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-146-P2-v1 Mun-Mir-146-P2-v2 Mun-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmu-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

146-P1_LR594636.1:42038047-42038189: 43-101 [-]

Precursor
(pre-Mir +30nt flank)

UUCCUGAAAGCGAUACUGUGUGCCCAGCUUUGAGAACUGAAUUCCAUAAGCUUUAAUAUACAAACAAAUGCUGUGGAUUCAGUUCUGCCGCUGGGCACUAACCAUUCAGCAAUAUCUGG

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Structure

        10          20        30        40        50        60
UUCCUGAAAGCGAUACUGU--|        UUUG          U     A  UUUAAUAU 
                     GUGCCCAGC    AGAACUGAAU CCAUA GC        A
                     CACGGGUCG    UCUUGACUUA GGUGU CG        C
GGUCUAUAACGACUUACCAAU^        CCG-          -     -  UAAACAAA 
       110       100        90         80          70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-146-P1_5p (predicted)

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUAAGCUUU -24

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Star sequence

Mun-Mir-146-P1_3p* (predicted)

mirBase accession

None

Sequence

38- UGCUGUGGAUUCAGUUCUGCC -59

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