Mir-146-P1

MirGeneDB ID

Cfa-Mir-146-P1

Family name

MIR-146 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-146b

Paralogues

Cfa-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr28: 14940550-14940609 [+] UCSC Ensembl

Seed

GAGAACU

Precursor
(pre-Mir +30nt flank)

AAGGCUGAGAGAACGCUGGCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUGUGAGCUUGAGCAAACAGCCUAGGGACUCAGUUCUGGUGCCCGGCUGUGCUCUACCGUCAAUAUGGAG

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Structure

        10        20          30        40        50        60
AAGGCUGAGAGAACGCUG  -  -| U   U  G        A    A        GAGCU 
                  GC CA CC GGC CU AGAACUGA UUCC UAGGCUGU     U
                  CG GU GG CCG GG UCUUGACU AGGG AUCCGACA     G
GAGGUAUAACUGCCAUCU  U  C^ C   U  -        C    -        AACGA 
.       110       100        90         80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-146-P1_5p

mirBase accession

MIMAT0006667

Sequence

0- UGAGAACUGAAUUCCAUAGGCUGU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-146b
miRDB: MIMAT0006667

Star sequence

Cfa-Mir-146-P1_3p*

mirBase accession

None

Sequence

38- AGCCUAGGGACUCAGUUCUGGU -60

Get sequence