Mir-146-P1

MirGeneDB ID

Gja-Mir-146-P1

Family name

MIR-146 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-146-P2

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015172003.1: 221257-221316 [+]

Seed

GAGAACU

Precursor
(pre-Mir +30nt flank)

UACUAGAAGCCCUGAAUGGCUGUUUGGCUCUGAGAACUGAAUUCCAUAGGCUUUGUGAUAACAGAAACGCCCCAUGGAUUCAGUUCUACAGCUUGACAGCAGCUGAACACCAAGAAGCUG

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Structure

        10          20        30        40         50          
UACUAGAAGCCCUGAAUG--|     U    CUG          U    A-   U  GUGAU 
                    GCUGUU GGCU   AGAACUGAAU CCAU  GGC UU     \
                    CGACAG UCGA   UCUUGACUUA GGUA  CCG AA     A
GUCGAAGAACCACAAGUCGA^     U    CA-          -    CC   C  AGACA 
.       110       100        90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-146-P1_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUAGGCUUU -24

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Star sequence

Gja-Mir-146-P1_3p*

mirBase accession

None

Sequence

37- CGCCCCAUGGAUUCAGUUCUACA -60

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