MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-146-P2

Family name MIR-146 (all species)
Seed GAGAACU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-146-P1 
Orthologues Aca-Mir-146-P2  Ami-Mir-146-P2  Cli-Mir-146-P2  Cmi-Mir-146-P2  Cpi-Mir-146-P2  Ebu-Mir-146  Gga-Mir-146-P2  Lch-Mir-146-P2  Mun-Mir-146-P2-v1  Mun-Mir-146-P2-v2  Pbv-Mir-146-P2  Pma-Mir-146  Spt-Mir-146-P2  Sto-Mir-146-P2  Tgu-Mir-146-P2  Xla-Mir-146-P2a  Xla-Mir-146-P2b  Xtr-Mir-146-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015169717.1: 680-745 [+]
Precursor
(pre-Mir +30nt flank)
GACGUGCAGAACGCUGGCAGUUCCAAGCUCUGAGAACUGGUUUUCAUAGACUGGUUCCAGUUCUGUAAGCUCAGUCCGUGAUACUCAGUUCUCUAGCUUGACUGUAUCUGACUUCAUAACUUAGGA
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Structure
        10             20        30         40        50        60  
GACGUGCAGAACGCUGG-----|   UC      CU        -  UU   UA     GUUCCAGU 
                      CAGU  CAAGCU  GAGAACUG GU  UCA  GACUG        U
                      GUCA  GUUCGA  CUCUUGAC CA  AGU  CUGAC        C
AGGAUUCAAUACUUCAGUCUAU^   --      U-        U  U-   GC     UCGAAUGU 
    120       110         100         90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-146-P2_5p

mirBase accessionNone
Sequence
0- UGAGAACUGGUUUUCAUAGACUG -23
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Star sequence

Gja-Mir-146-P2_3p* (predicted)

mirBase accessionNone
Sequence
43- GUCCGUGAUACUCAGUUCUCUAG -66
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