MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-146-P2

Family name MIR-146 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-146b
Paralogues Xtr-Mir-146-P4 
Orthologues Aca-Mir-146-P2  Ami-Mir-146-P2  Cli-Mir-146-P2  Cmi-Mir-146-P2  Cpi-Mir-146-P2  Ebu-Mir-146  Gga-Mir-146-P2  Gja-Mir-146-P2  Lch-Mir-146-P2  Mun-Mir-146-P2-v1  Pbv-Mir-146-P2  Pma-Mir-146  Spt-Mir-146-P2  Sto-Mir-146-P2  Tgu-Mir-146-P2  Xla-Mir-146-P2a  Xla-Mir-146-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr1: 8024093-8024157 [+] UCSC Ensembl
Seed GAGAACU
Precursor
(pre-Mir +30nt flank)		 
ACAGCGAGGACCAAUGGCAGGGCCCGGCUCUGAGAACUGAAUUCCAUGGACUGUUCCACUCACAGCACCCUCAGUCCACAGUGUUCAGUGCUCCAGUCUGGCUGCCACUAACAUCAUGGCUAACA
Get precursor sequence
Structure
        10        20          30        40        50        60  
ACAGCGAGGACCAAUGGCAG--|   C    CU   A       UCCA       UUCCACUC 
                      GGCC GGCU  GAG ACUGAAU    UGGACUG        A
                      UCGG CUGA  CUC UGACUUG    ACCUGAC        C
ACAAUCGGUACUACAAUCACCG^   U    C-   G       UGAC       UCCCACGA 
   120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-146-P2_5p
mirBase accessionMIMAT0005563
Sequence 
0- UGAGAACUGAAUUCCAUGGACUG -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-146b
Star sequence

Xtr-Mir-146-P2_3p*
mirBase accessionNone
Sequence 
43- GUCCACAGUGUUCAGUGCUCCA -65
Get sequence