MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-146-P2

Family name MIR-146 (all species)
Seed GAGAACU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-146c
Paralogues Ami-Mir-146-P1  Ami-Mir-146-P4 
Orthologues Aca-Mir-146-P2  Cli-Mir-146-P2  Cmi-Mir-146-P2  Cpi-Mir-146-P2  Ebu-Mir-146  Gga-Mir-146-P2  Gja-Mir-146-P2  Lch-Mir-146-P2  Mun-Mir-146-P2-v1  Mun-Mir-146-P2-v2  Pbv-Mir-146-P2  Pma-Mir-146  Spt-Mir-146-P2  Sto-Mir-146-P2  Tgu-Mir-146-P2  Xla-Mir-146-P2a  Xla-Mir-146-P2b  Xtr-Mir-146-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712067.1: 5690417-5690481 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAUGUGACACAAUCUGGCAGUUCCCAGCUCUGAGAACUGAAUUCCAUGGACUGGUUCCCUCUUCAUAUCUUCAGUCCAUAGUAGUCAGUUCUCUAGCUUGGCUGUAUCUGACUUCACAACUAGUA
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Structure
        10            20        30        40        50        60  
GAUGUGACACAAUCUGG----|  UU  C    CU         AUUCC        GUUCCCUC 
                     CAG  CC AGCU  GAGAACUGA     AUGGACUG        U
                     GUC  GG UCGA  CUCUUGACU     UACCUGAC        U
AUGAUCAACACUUCAGUCUAU^  --  U    U-         GAUGA        UUCUAUAC 
   120       110         100         90        80        70
Deep sequencing
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CommentIt is likely that this miRNA is monouridylated but there are not enough reads to make this determination.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-146-P2_5p
mirBase accessionMIMAT0038174
Sequence 
0- UGAGAACUGAAUUCCAUGGACUG -23
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Star sequence

Ami-Mir-146-P2_3p*
mirBase accessionMIMAT0038175
Sequence 
43- GUCCAUAGUAGUCAGUUCUCUA -65
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