MirGeneDB ID | Ami-Mir-146-P2 |
Family name |
MIR-146 (all species) |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-146c
|
Paralogues |
Ami-Mir-146-P1
Ami-Mir-146-P4
|
Orthologues |
Aca-Mir-146-P2
Cli-Mir-146-P2
Cmi-Mir-146-P2
Cpi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Mun-Mir-146-P2-v1
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Tgu-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017712067.1: 5690417-5690481 [-]
UCSC
|
Seed |
GAGAACU |
Precursor (pre-Mir +30nt flank) |
GAUGUGACACAAUCUGGCAGUUCCCAGCUCUGAGAACUGAAUUCCAUGGACUGGUUCCCUCUUCAUAUCUUCAGUCCAUAGUAGUCAGUUCUCUAGCUUGGCUGUAUCUGACUUCACAACUAGUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUGUGACACAAUCUGG----| UU C CU AUUCC GUUCCCUC
CAG CC AGCU GAGAACUGA AUGGACUG U
GUC GG UCGA CUCUUGACU UACCUGAC U
AUGAUCAACACUUCAGUCUAU^ -- U U- GAUGA UUCUAUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is likely that this miRNA is monouridylated but there are not enough reads to make this determination. |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ami-Mir-146-P2_5p |
mirBase accession | MIMAT0038174 |
Sequence |
0- UGAGAACUGAAUUCCAUGGACUG -23
Get sequence
|
Star sequence |
Ami-Mir-146-P2_3p* |
mirBase accession | MIMAT0038175 |
Sequence |
43- GUCCAUAGUAGUCAGUUCUCUA -65
Get sequence
|