MirGeneDB ID | Tgu-Mir-146-P2 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-146a
|
Paralogues |
Tgu-Mir-146-P1
Tgu-Mir-146-P4
|
Orthologues |
Aca-Mir-146-P2
Ami-Mir-146-P2
Cli-Mir-146-P2
Cmi-Mir-146-P2
Cpi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Mun-Mir-146-P2-v1
Mun-Mir-146-P2-v2
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (TaeGut1_add) |
4: 3170777-3170841 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUGUGACGAAUGUUGGCAGUUCCCAGCUCUGAGAACUGAAUUCCAUGGACUGGUUCCAGUUCCAUGUGUUCAGUCCAUGGUAUUCAGUUCUCUAGCUUGGCUGCAUCGAACUUCACAACUGCUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUGUGACGAAUGUUGGCA- UC -| CU U GUUCCAGU
GU CC AGCU GAGAACUGAAU CCAUGGACUG U
CG GG UCGA CUCUUGACUUA GGUACCUGAC C
AUCGUCAACACUUCAAGCUA UC U^ U- U UUGUGUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tgu-Mir-146-P2_5p |
mirBase accession | MIMAT0014622 |
Sequence |
0- UGAGAACUGAAUUCCAUGGACUG -23
Get sequence
|
Star sequence |
Tgu-Mir-146-P2_3p* |
mirBase accession | MIMAT0014465 |
Sequence |
43- GUCCAUGGUAUUCAGUUCUCUA -65
Get sequence
|