Mir-146-P1

MirGeneDB ID

Cja-Mir-146-P1

Family name

MIR-146 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021926.1: 92089096-92089155 [+] UCSC Ensembl

Seed

GAGAACU

Precursor
(pre-Mir +30nt flank)

CAGGCUGAAAGAACUUUGGCCACCUGGCACUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGCGAAUGCCCUAUGGACUCAGUUCUGGUGCCCGGUGGUGCUGCACCAUCCCAAGGCUG

Get precursor sequence

Structure

        10          20        30        40        50        60
CAGGCUGAAAGAACUUUG--|     U      G        AU        CU  GAGCU 
                    GCCACC GGCACU AGAACUGA  UCCAUAGG  GU     C
                    UGGUGG CCGUGG UCUUGACU  AGGUAUCC  UA     U
GUCGGAACCCUACCACGUCG^     C      -        C-        CG  AGCGA 
.       110       100        90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-146-P1_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUAGGCUGU -24

Get sequence

Star sequence

Cja-Mir-146-P1_3p* (predicted)

mirBase accession

None

Sequence

38- GCCCUAUGGACUCAGUUCUGGU -60

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