Mir-146-P1

MirGeneDB ID

Pbv-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-146a

Paralogues

Pbv-Mir-146-P2

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953034.1: 15509-15569 [+]

Precursor
(pre-Mir +30nt flank)

GAGCAAGAUCCCUAUAUGGCUGCUUAGCUCUGAGAACUGAAUUCCAUAGGCUUUAGAAGAAAUGAAACGCCCCGUGGAUUCAGUUCUACAGCUAGACAGCUAAUAAACUCCAGACAGUCUG

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Structure

        10           20        30        40         50          
GAGCAAGAUCCCUAUAU---|    CU     CUG          U    A-   UUUAGAAG 
                    GGCUG  UAGCU   AGAACUGAAU CCAU  GGC        \
                    UCGAC  AUCGA   UCUUGACUUA GGUG  CCG        A
GUCUGACAGACCUCAAAUAA^    AG     CA-          -    CC   CAAAGUAA 
 .       110       100        90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pbv-Mir-146-P1_5p

mirBase accession

MIMAT0038961

Sequence

0- UGAGAACUGAAUUCCAUAGGCUU -23

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Star sequence

Pbv-Mir-146-P1_3p* (predicted)

mirBase accession

None

Sequence

38- GCCCCGUGGAUUCAGUUCUACAG -61

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