MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 17: 4971502-4971563 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAACAGACUUUAAGGAGUGCUCUGCUGUGAGAACUGAAUUCCAUAGAUGGUGACAUUUGUAUGUGUCAUCUAUGGGCUCAGUUCUUUUGGCUUGGUACUGUUUUGCCGACAGUUAUUAC
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Structure
        10          20        30        40        50        60 
AGAAAACAGACUUUAAGG--|     CU    U         AU           UGACAUU 
                    AGUGCU  GCUG GAGAACUGA  UCCAUAGAUGG       \
                    UCAUGG  CGGU UUCUUGACU  GGGUAUCUACU       U
CAUUAUUGACAGCCGUUUUG^     UU    U         C-           GUGUAUG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-146-P1_5p
mirBase accessionNone
Sequence 
0- UGAGAACUGAAUUCCAUAGAUGG -23
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Star sequence

Tni-Mir-146-P1_3p*
mirBase accessionNone
Sequence 
40- AUCUAUGGGCUCAGUUCUUUUG -62
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