Mir-146-P4

MirGeneDB ID

Xla-Mir-146-P4

Family name

MIR-146 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-146a

Paralogues

Xla-Mir-146-P2a Xla-Mir-146-P2b

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Ebu-Mir-146 Eca-Mir-146-P4-v1 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 19665733-19665788 [+] UCSC Ensembl

Seed

GAGAACU

Precursor
(pre-Mir +30nt flank)

UGAAUAGCGAUAACAAUGAGUUCUUAGCUUUGAGAACUGAAUUCCAUAGGUUGUUAGGGGUUAGACCUAUGGUGCUUAGUUCCAUAGCUUGGAUCCCACCUGCCUCGGAACAAGAA

Get precursor sequence

Structure

        10        20          30        40        50        
UGAAUAGCGAUAACAAUGAGU--|  U    U  A       AUU         GUUAG 
                       UCU AGCU UG GAACUGA   CCAUAGGUU     \
                       AGG UCGA AC CUUGAUU   GGUAUCCAG     G
AAGAACAAGGCUCCGUCCACCCU^  U    U  -       CGU         AUUGG 
    110       100        90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-146-P4_5p

mirBase accession

MIMAT0046462

Sequence

0- UGAGAACUGAAUUCCAUAGGUUG -23

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Star sequence

Xla-Mir-146-P4_3p*

mirBase accession

MIMAT0046463

Sequence

34- ACCUAUGGUGCUUAGUUCCAUA -56

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