MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-34-P3a

Family name MIR-34 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-449c
Paralogues Cli-Mir-34-P1  Cli-Mir-34-P2a  Cli-Mir-34-P2b  Cli-Mir-34-P3b  Cli-Mir-34-P3c  Cli-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(colLiv2)		 scaffold22: 2804282-2804344 [-]
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3d scaffold22: 2802157-2802215 [-]
Mir-34-P3c scaffold22: 2803153-2803209 [-]
Mir-34-P3b scaffold22: 2803312-2803372 [-]
Mir-34-P3a scaffold22: 2804282-2804344 [-]
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AUGGCCAAAAUUCAAGAGAAUGUAACAGUCUGGCAGUGCAUGUUAGCUGGCUGUUGUGUCUGAUGUGUCAACAGCUGCUAGCUGUGCUCCACAUUGUUUCAUUCAAAAGCACCGUAGAAAACU
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Structure
        10          20        30        40        50        60  
AUGGCCAAAAUUCAAGA--|    U      C   C  UG  U      U       GUGUCU 
                   GAAUG AACAGU UGG AG  CA GUUAGC GGCUGUU      G
                   CUUAC UUGUUA ACC UC  GU CGAUCG UCGACAA      A
UCAAAAGAUGCCACGAAAA^    U      C   -  GU  -      -       CUGUGU 
 120       110       100        90          80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-34-P3a_5p
mirBase accessionMIMAT0038639
Sequence 
0- UGGCAGUGCAUGUUAGCUGGCUGUU -25
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Star sequence

Cli-Mir-34-P3a_3p*
mirBase accessionMIMAT0038640
Sequence 
41- CAGCUGCUAGCUGUGCUCCACA -63
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