MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-34-P3a1

Family name MIR-34 (all species)
Seed AGUUGUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xla-Mir-34-P2c1  Xla-Mir-34-P2c2  Xla-Mir-34-P3a2  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Loc-Mir-34-P3a  Mmu-Mir-34-P3a  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ovu-Mir-34  Pbv-Mir-34-P3a  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3a  Sko-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Xbo-Mir-34  Xtr-Mir-34-P3a 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 195730190-195730254 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGGUGAUAAAAGUUUGGUUGGACCAGUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUUCUGGAAACUUACAGUUGUUAGCUGCACUCCACAUUGUUUCAUUCUGAGCAGCGUUCGGGUGUG
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Structure
        10          20        30        40        50        60    
ACAGGUGAUAAAAGUUU--|GU    C     A  C      CUU      U      UGUGUUC 
                   G  UGGA CAGUG GG AGUGCA   GCUAGC GGCUGU       U
                   C  ACUU GUUAC CC UCACGU   CGAUUG UUGACA       G
GUGUGGGCUUGCGACGAGU^UU    U     A  -      ---      -      UUCAAAG 
   120       110       100         90           80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-34-P3a1_5p*
mirBase accessionNone
Sequence 
0- AGGCAGUGCACUUGCUAGCUGGCUGUU -27
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Mature sequence

Xla-Mir-34-P3a1_3p
mirBase accessionNone
Sequence 
43- CAGUUGUUAGCUGCACUCCACA -65
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