Mir-34-P3a1

MirGeneDB ID

Xla-Mir-34-P3a1

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P3a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 195730190-195730254 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a1)

Mir-34-P3a1 NC_030724.1: 195730190-195730254 [+] UCSC Ensembl
Mir-34-P3b1 NC_030724.1: 195730406-195730466 [+] UCSC Ensembl
Mir-34-P3c1 NC_030724.1: 195730544-195730604 [+] UCSC Ensembl
Mir-34-P3d1 NC_030724.1: 195731803-195731861 [+] UCSC Ensembl

Seed

AGUUGUU

Precursor
(pre-Mir +30nt flank)

ACAGGUGAUAAAAGUUUGGUUGGACCAGUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUUCUGGAAACUUACAGUUGUUAGCUGCACUCCACAUUGUUUCAUUCUGAGCAGCGUUCGGGUGUG

Get precursor sequence

Structure

        10          20        30        40        50        60    
ACAGGUGAUAAAAGUUU--|GU    C     A  C      CUU      U      UGUGUUC 
                   G  UGGA CAGUG GG AGUGCA   GCUAGC GGCUGU       U
                   C  ACUU GUUAC CC UCACGU   CGAUUG UUGACA       G
GUGUGGGCUUGCGACGAGU^UU    U     A  -      ---      -      UUCAAAG 
   120       110       100         90           80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-34-P3a1_5p*

mirBase accession

None

Sequence

0- AGGCAGUGCACUUGCUAGCUGGCUGUU -27

Get sequence

Mature sequence

Xla-Mir-34-P3a1_3p

mirBase accession

None

Sequence

43- CAGUUGUUAGCUGCACUCCACA -65

Get sequence