MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-34-P2c1

Family name MIR-34 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xla-Mir-34-P2c2  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 77170709-77170769 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2c1)		 Mir-34-P2b2a NC_030736.1: 77161920-77161974 [-] UCSC Ensembl
Mir-34-P2a2b NC_030736.1: 77162218-77162279 [-] UCSC Ensembl
Mir-34-P2a1a NC_030736.1: 77170709-77170770 [+] UCSC Ensembl
Mir-34-P2c1 NC_030736.1: 77170709-77170769 [+] UCSC Ensembl
Mir-34-P2b1a NC_030736.1: 77172141-77172195 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
ACAUGUCUGUCUGAACUGUGUUAGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAAAUCAAAUGUGCAAUCACUAGCUAAACUGCCAUCAAAACUCAACAUGAAAGUGCUGCAUGGAUA
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Structure
        10         20        30         40        50        60
ACAUGUCUGUCUGAACU-     AG     CA-|     G       C       GUUAAA 
                  GUGUU  GUUUU   GGCAGU UAGUUAG UGAUUGU      U
                  UACAA  CAAAA   CCGUCA AUCGAUC ACUAACG      C
AUAGGUACGUCGUGAAAG     CU     CUA^     A       -       UGUAAA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-34-P2c1_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Xla-Mir-34-P2c1_3p*
mirBase accessionNone
Sequence 
39- AAUCACUAGCUAAACUGCCAUC -61
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