Mir-34-P3c1

MirGeneDB ID

Xla-Mir-34-P3c1

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P3c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 195730544-195730604 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c1)

Mir-34-P3a1 NC_030724.1: 195730190-195730254 [+] UCSC Ensembl
Mir-34-P3b1 NC_030724.1: 195730406-195730466 [+] UCSC Ensembl
Mir-34-P3c1 NC_030724.1: 195730544-195730604 [+] UCSC Ensembl
Mir-34-P3d1 NC_030724.1: 195731803-195731861 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUUUUCACUAAGGAUCUGUGUUUAGAGGGAAGGCAGUGUAAUGUUAGCUGGUUGGGAAGUAACAGACACCGGUUAACUUACACCUGCCCCCCUUCUUCACAUUCGUUCGUCGGAUCAUCAC

Get precursor sequence

Structure

        10          20        30         40        50          
CUUUUCACUAAGGAUCU--    UU      AA    -|     U          UGGGAAG 
                   GUGU  AGAGGG  GGCA GUGUAA GUUAGCUGGU       \
                   UACA  UCUUCC  CCGU CACAUU CAAUUGGCCA       U
CACUACUAGGCUGCUUGCU    CU      CC    C^     -          CAGACAA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-34-P3c1_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAAUGUUAGCUGGU -22

Get sequence

Star sequence

Xla-Mir-34-P3c1_3p*

mirBase accession

None

Sequence

39- CGGUUAACUUACACCUGCCCCC -61

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