MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-34-P3d2

Family name MIR-34 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xla-Mir-34-P2c1  Xla-Mir-34-P2c2  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xla-Mir-34-P3d1 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xtr-Mir-34-P3d 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030725.1: 160609358-160609416 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d2)		 Mir-34-P3a2 NC_030725.1: 160607230-160607294 [+] UCSC Ensembl
Mir-34-P3b2 NC_030725.1: 160607480-160607541 [+] UCSC Ensembl
Mir-34-P3c2 NC_030725.1: 160607625-160607685 [+] UCSC Ensembl
Mir-34-P3d2 NC_030725.1: 160609358-160609416 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AUAAACAAAGUCUGUGUAUGUGUGGUGAUUAGGCAGUGUAUCGUUAGUUUGCUGUUGAACUUAAACCAGCAGCUAUGUACACUACCACAUCAGCAUAUGACGCAUCAUCUUUUUACAUA
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Structure
        10          20        30        40        50        60
AUAAACAAAGUCUGUGUAU--|    G    UA  C      U   U    U    UUGAA 
                     GUGUG UGAU  GG AGUGUA CGU AGUU GCUG     C
                     UAUAC ACUA  CC UCACAU GUA UCGA CGAC     U
AUACAUUUUUCUACUACGCAG^    G    CA  A      -   -    -    CAAAU 
       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-34-P3d2_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUCGUUAGUUUGCUG -24
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Co-mature sequence

Xla-Mir-34-P3d2_3p
mirBase accessionNone
Sequence 
38- GCAGCUAUGUACACUACCACA -59
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