MirGeneDB ID | Aca-Mir-34-P3d |
Family name |
MIR-34 (all species) |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-449c
|
Paralogues |
Aca-Mir-34-P1
Aca-Mir-34-P2a
Aca-Mir-34-P2b
Aca-Mir-34-P3a
Aca-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aga-Mir-34
Agr-Mir-34
Ami-Mir-34-P3d
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cin-Mir-34
Cli-Mir-34-P3d
Cmi-Mir-34-P3d
Cpi-Mir-34-P3d
Cte-Mir-34
Dan-Mir-34
Dlo-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3d
Gja-Mir-34-P3d
Gmo-Mir-34-P3d
Gpa-Mir-34
Gsp-Mir-34
Hmi-Mir-34
Hru-Mir-34
Isc-Mir-34
Lch-Mir-34-P3d
Lgi-Mir-34
Lhy-Mir-34
Llo-Mir-34
Loc-Mir-34-P3d
Mal-Mir-34-P3d
Mdo-Mir-34-P3d
Mgi-Mir-34
Mom-Mir-34
Mun-Mir-34-P3d
Neu-Mir-34-P3d
Npo-Mir-34
Obi-Mir-34
Ofu-Mir-34
Ovu-Mir-34
Pau-Mir-34
Pbv-Mir-34-P3d
Pca-Mir-34
Pdu-Mir-34
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Pve-Mir-34
Rph-Mir-34
Sha-Mir-34-P3d
Sko-Mir-34
Snu-Mir-34
Spt-Mir-34-P3d
Spu-Mir-34
Sto-Mir-34-P3d
Tca-Mir-34
Tgu-Mir-34-P3d
Tur-Mir-34
War-Mir-34
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
Xtr-Mir-34-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (anoCar2) |
2: 2666240-2666298 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-34-P3d) |
Mir-34-P3a
2: 2663692-2663757 [+]
UCSC
Ensembl
Mir-34-P3c
2: 2665578-2665639 [+]
UCSC
Ensembl
Mir-34-P3d
2: 2666240-2666298 [+]
UCSC
Ensembl
|
Seed |
GGCAGUG |
Precursor (pre-Mir +30nt flank) |
UGGUAUCAGUAUUCUCUGUAUGUGAUGGUUUGGCAGUGUACUCUUAGUUAGCUGUUGUAUAUAUUACAGCAACUAAAUACACUUCCAUAUUAUUGCAUGACUUUGCACCACUGCUUAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGUAUCAGUAUUCUCUG--| UG U C CUC A UUGUA
UAUG AUGGU UGG AGUGUA UUAGUU GCUG U
GUAC UAUUA ACC UCACAU AAUCAA CGAC A
UAAUUCGUCACCACGUUUCA^ GU U U A-- - AUUAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-34-P3d_5p |
mirBase accession | MIMAT0022014 |
Sequence |
0- UGGCAGUGUACUCUUAGUUAGCUG -24
Get sequence
|
Star sequence |
Aca-Mir-34-P3d_3p* |
mirBase accession | MIMAT0022015 |
Sequence |
38- GCAACUAAAUACACUUCCAUA -59
Get sequence
|