MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-34-P3d

Family name MIR-34 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-34-P1  Sha-Mir-34-P2a  Sha-Mir-34-P2b  Sha-Mir-34-P3b  Sha-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL841771.1: 109094-109154 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d)		 Mir-34-P3b GL841771.1: 107667-107727 [+] UCSC Ensembl
Mir-34-P3c GL841771.1: 107807-107867 [+] UCSC Ensembl
Mir-34-P3d GL841771.1: 109094-109154 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
GUCUGGCUUUAGUAUAUGUGUGUGGUGAUUGGGCAGUGUAUUGUUAGUUAGCUGUUUUUCUUAUUUUCCAGCAACUGCAUACACUUCCACAUUUCCACAUGUUCUGUCAUCAGGACAGAUU
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Structure
        10          20         30        40        50        60 
GUCUGGCUUUAGUAUAU-- UG     U   -|   C       U  U    A   GUUUUUC 
                   G  UGUGG GAU UGGG AGUGUAU GU AGUU GCU       U
                   U  ACACC UUA ACCU UCACAUA CG UCAA CGA       U
UUAGACAGGACUACUGUCU GU     U   C^   -       -  -    -   CCUUUUA 
 .       110       100        90         80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-34-P3d_5p
mirBase accessionNone
Sequence 
0- GGGCAGUGUAUUGUUAGUUAGCU -23
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Star sequence

Sha-Mir-34-P3d_3p*
mirBase accessionNone
Sequence 
40- GCAACUGCAUACACUUCCACA -61
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