Mir-34-P3d1

MirGeneDB ID

Xla-Mir-34-P3d1

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P3d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 195731803-195731861 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3d1)

Mir-34-P3a1 NC_030724.1: 195730190-195730254 [+] UCSC Ensembl
Mir-34-P3b1 NC_030724.1: 195730406-195730466 [+] UCSC Ensembl
Mir-34-P3c1 NC_030724.1: 195730544-195730604 [+] UCSC Ensembl
Mir-34-P3d1 NC_030724.1: 195731803-195731861 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAUAAACAAAGUUUUGUUUGUGUGGUGAUUAGGCAGUGUAUUGUUAGUUUGCUGUUGAACUUAAACCAGCAGCUACGUACACUACCACAUCAGCACAUGACGUGUCAUCUUUUUACAUC

Get precursor sequence

Structure

        10          20        30        40        50        60
AAUAAACAAAGUUUUGU--|UG    G    UA  C       U  U    U    UUGAA 
                   U  UGUG UGAU  GG AGUGUAU GU AGUU GCUG     C
                   A  ACAC ACUA  CC UCACAUG CA UCGA CGAC     U
CUACAUUUUUCUACUGUGC^GU    G    CA  A       -  -    -    CAAAU 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-34-P3d1_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAUUGUUAGUUUGCUGU -25

Get sequence

Co-mature sequence

Xla-Mir-34-P3d1_3p

mirBase accession

None

Sequence

37- AGCAGCUACGUACACUACCACA -59

Get sequence