MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-34-P3a

Family name MIR-34 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P1  Loc-Mir-34-P2a  Loc-Mir-34-P2b  Loc-Mir-34-P3b  Loc-Mir-34-P3c  Loc-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG2: 5771825-5771881 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a LG2: 5771825-5771881 [+] Ensembl
Mir-34-P3b LG2: 5772422-5772481 [+] Ensembl
Mir-34-P3c LG2: 5772554-5772612 [+] Ensembl
Mir-34-P3d LG2: 5773026-5773084 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UCCUGCAUUGCUCUCUGGACUGUAUCAGUGUGGCAGUGUACUGCUGCUGGCUGUUGUGUUUUUGACAGCUAUUGGCUACACUCCACCCUGCUGCAAUCAAUACCACCGCUCAACCCA
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Structure
        10          20        30        40        50         
UCCUGCAUUGCUCUCUG--| C    U   U    C      CU   GC        GUG 
                   GA UGUA CAG GUGG AGUGUA  GCU  UGGCUGUU   U
                   CU ACGU GUC CACC UCACAU  CGG  AUCGACAG   U
ACCCAACUCGCCACCAUAA^ A    C   C    -      --   UU        UUU 
     110       100        90         80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P3a_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUACUGCUGCUGGCUGUU -25
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Star sequence

Loc-Mir-34-P3a_3p*
mirBase accessionNone
Sequence 
35- CAGCUAUUGGCUACACUCCACC -57
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