Mir-34-P2a

MirGeneDB ID

Loc-Mir-34-P2a

Family name

MIR-34 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG26: 394489-394545 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2a LG26: 394489-394545 [+] Ensembl
Mir-34-P2b LG26: 395123-395177 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUCGGGCCGACCUGCUAGGGCCUGGUCUGUAGGCAGUGUAGUUAGCUGAUUGUUCUCCUGGCUGCAAUCACUAACCACACUACCAACACAACAGGUGACAAGAAGACACAGCCCUUC

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Structure

        10          20        30        40        50        
AUCGGGCCGACCUGCUAGG--|    GUC   A  C     A     C       UCUC 
                     GCCUG   UGU GG AGUGU GUUAG UGAUUGU    C
                     UGGAC   ACA CC UCACA CAAUC ACUAACG    U
CUUCCCGACACAGAAGAACAG^    AAC   A  A     C     -       UCGG 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P2a_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

Get sequence

Star sequence

Loc-Mir-34-P2a_3p*

mirBase accession

None

Sequence

35- AAUCACUAACCACACUACCAAC -57

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