MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-34-P2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-34b
Paralogues Gga-Mir-34-P1  Gga-Mir-34-P2b  Gga-Mir-34-P3a  Gga-Mir-34-P3b  Gga-Mir-34-P3c  Gga-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lch-Mir-34-P2a  Lgi-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
24: 5568852-5568910 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a)
Mir-34-P2a 24: 5568852-5568910 [+] UCSC Ensembl
Mir-34-P2b 24: 5569588-5569642 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCAUCCUGAGAGCAGUGCUUGGUUUGCAGGCAGUGUAGUUAGCUGAUUGUACCCAGCGCCCCACAAUCACUAAAUUCACUGCCAUCAAAACAAGGCACAGGACCCCGUGUGACAGC
Get precursor sequence
Structure
        10         20         30        40        50         
GCACCAUCCUGAGAGCA-      GG-|   CA       UAG    C       ACCCA 
                  GUGCUU   UUUG  GGCAGUG   UUAG UGAUUGU     G
                  CACGGA   AAAC  CCGUCAC   AAUC ACUAACA     C
CGACAGUGUGCCCCAGGA      ACA^   UA       UUA    -       CCCCG 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-34-P2a_5p

mirBase accessionMIMAT0001179
Sequence
0- AGGCAGUGUAGUUAGCUGAUUGU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-34b-5p
miRDB: MIMAT0001179
Star sequence

Gga-Mir-34-P2a_3p*

mirBase accessionMIMAT0026540
Sequence
37- AAUCACUAAAUUCACUGCCAUC -59
Get sequence
Proposed targets TargetScanVert: gga-miR-34b-3p
miRDB: MIMAT0026540