Mir-34-P2a

MirGeneDB ID

Gga-Mir-34-P2a

Family name

MIR-34 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-34b

Paralogues

Gga-Mir-34-P1 Gga-Mir-34-P2b Gga-Mir-34-P3a Gga-Mir-34-P3b Gga-Mir-34-P3c Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

24: 5568852-5568910 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2a 24: 5568852-5568910 [+] UCSC Ensembl
Mir-34-P2b 24: 5569588-5569642 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GCACCAUCCUGAGAGCAGUGCUUGGUUUGCAGGCAGUGUAGUUAGCUGAUUGUACCCAGCGCCCCACAAUCACUAAAUUCACUGCCAUCAAAACAAGGCACAGGACCCCGUGUGACAGC

Get precursor sequence

Structure

        10         20         30        40        50         
GCACCAUCCUGAGAGCA-      GG-|   CA       UAG    C       ACCCA 
                  GUGCUU   UUUG  GGCAGUG   UUAG UGAUUGU     G
                  CACGGA   AAAC  CCGUCAC   AAUC ACUAACA     C
CGACAGUGUGCCCCAGGA      ACA^   UA       UUA    -       CCCCG 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P2a_5p

mirBase accession

MIMAT0001179

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-34b-5p
miRDB: MIMAT0001179

Star sequence

Gga-Mir-34-P2a_3p*

mirBase accession

MIMAT0026540

Sequence

37- AAUCACUAAAUUCACUGCCAUC -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-34b-3p
miRDB: MIMAT0026540