MirGeneDB 3.0
MirGeneDB ID

Neu-Mir-34-P2a

Family name MIR-34 (all species)
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-34-P1  Neu-Mir-34-P3b  Neu-Mir-34-P3c  Neu-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cin-Mir-34  Cja-Mir-34-P2a  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Eca-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P2a  Isc-Mir-34  Laf-Mir-34-P2a  Lch-Mir-34-P2a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mgi-Mir-34  Mml-Mir-34-P2a  Mmr-Mir-34-P2a  Mmu-Mir-34-P2a  Mom-Mir-34  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P2a  Pau-Mir-34  Pbv-Mir-34-P2a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P2a  Rph-Mir-34  Sha-Mir-34-P2a  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_028372415.1_mMacEug1.pri)		 CM051817.1: 142806467-142806525 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a-v1)		 Mir-34-P2a-v2 CM051817.1: 142806466-142806526 [-] UCSC Ensembl
Mir-34-P2a-v1 CM051817.1: 142806467-142806525 [-] UCSC Ensembl
Variant

Neu-Mir-34-P2a-v1
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
CAGCAGCGGCGCGUCCAGUGCUCGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUAUUCUACUGCCUGCAAUCACUAACUCCACUGCCAUCAAAACAAGGCACAGCAUCACCGGCUGCCGA
Get precursor sequence
Structure
        10         20        30         40        50         
CAGCAGCGGCGCGUCCA-     CG    GUA-|      U      C       AUUCU 
                  GUGCU  GUUU    GGCAGUG AGUUAG UGAUUGU     A
                  CACGG  CAAA    CCGUCAC UCAAUC ACUAACG     C
AGCCGUCGGCCACUACGA     AA    ACUA^      C      -       UCCGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-34-P2a-v1_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Neu-Mir-34-P2a-v1_3p*
mirBase accessionNone
Sequence 
37- AAUCACUAACUCCACUGCCAUC -59
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Variant

Neu-Mir-34-P2a-v2
Seed AGGCAGU
Precursor
(pre-Mir +30nt flank)		 
CCAGCAGCGGCGCGUCCAGUGCUCGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUAUUCUACUGCCUGCAAUCACUAACUCCACUGCCAUCAAAACAAGGCACAGCAUCACCGGCUGCCGAA
Get precursor sequence
Structure
        10         20        30         40        50        60
CCAGCAGCGGCGCGUCCA-     CG    GUA-|      U      C      UAUUCU 
                   GUGCU  GUUU    GGCAGUG AGUUAG UGAUUG      A
                   CACGG  CAAA    CCGUCAC UCAAUC ACUAAC      C
AAGCCGUCGGCCACUACGA     AA    ACUA^      C      -      GUCCGU 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-34-P2a-v2_5p
mirBase accessionNone
Sequence 
0- UAGGCAGUGUAGUUAGCUGAUUG -23
Get sequence
Star sequence

Neu-Mir-34-P2a-v2_3p*
mirBase accessionNone
Sequence 
39- AUCACUAACUCCACUGCCAUCA -61
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