Mir-34-P2a2

MirGeneDB ID

Xtr-Mir-34-P2a2

Family name

MIR-34 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-34b-1

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3a Xtr-Mir-34-P3b Xtr-Mir-34-P3c Xtr-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b

Node of Origin (locus)

Xenopus

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr7: 75066361-75066422 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a2)

Mir-34-P2b2 chr7: 75057976-75058030 [-] UCSC Ensembl
Mir-34-P2a1 chr7: 75059640-75059700 [-] UCSC Ensembl
Mir-34-P2a2 chr7: 75066361-75066422 [+] UCSC Ensembl
Mir-34-P2b1 chr7: 75066635-75066689 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUCCCUGCACCCGACUUAUGUUGGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAACAUAAGACUUGCAAUCACUAGCUAAACUACCAGCAAAACUAAACAUGAAAGUACUGUCUGACGU

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Structure

        10         20        30         40        50        60 
CUCCCUGCACCCGACUU-     G      CA-| C   G       C       GUUAACA 
                  AUGUU GGUUUU   GG AGU UAGUUAG UGAUUGU       \
                  UACAA UCAAAA   CC UCA AUCGAUC ACUAACG       U
UGCAGUCUGUCAUGAAAG     A      CGA^ A   A       -       UUCAGAA 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P2a2_5p

mirBase accession

MIMAT0003579

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

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Proposed targets

TargetScanVert: xtr-miR-34b

Star sequence

Xtr-Mir-34-P2a2_3p*

mirBase accession

None

Sequence

40- AAUCACUAGCUAAACUACCAGC -62

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