MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-34-P2b1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Ami-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dre-Mir-34-P2b  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Hsa-Mir-34-P2b  Isc-Mir-34  Lch-Mir-34-P2b  Lgi-Mir-34  Loc-Mir-34-P2b  Mdo-Mir-34-P2b  Mml-Mir-34-P2b  Mmu-Mir-34-P2b  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ovu-Mir-34  Pbv-Mir-34-P2b  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2b  Sha-Mir-34-P2b  Sko-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Xbo-Mir-34  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b 
Node of Origin (locus) Xenopus
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr7: 75066635-75066689 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2b1)		 Mir-34-P2a1 chr7: 75059640-75059700 [-] UCSC Ensembl
Mir-34-P2a2 chr7: 75066361-75066422 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUGGCGGAUAUUGGCAGUCUAGUUACCAGGCAGUGUAUUUAGAAGAUUUGAUUUAAUAUCAAUCACUAACUACACAGCUAGGUUAAGAGGACUGAAAUGCAACAAUACAACU
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Structure
        10         20         30        40        50        
AAGAUGGCGGAUAUUGG-      AGUU-|  A   A     U    AA    U  UUU 
                  CAGUCU     ACC GGC GUGUA UUAG  GAUU GA   \
                  GUCAGG     UGG UCG CACAU AAUC  CUAA CU   A
UCAACAUAACAACGUAAA      AGAAU^  A   A     C    A-    -  AUA 
   110       100        90        80        70          60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-34-P2b1_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUUUAGAAGAUUUGA -24
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Star sequence

Xtr-Mir-34-P2b1_3p*
mirBase accessionNone
Sequence 
33- AAUCACUAACUACACAGCUAGG -55
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