Mir-34-P2b

MirGeneDB ID

Cmi-Mir-34-P2b

Family name

MIR-34 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-34-P1 Cmi-Mir-34-P2a Cmi-Mir-34-P3a Cmi-Mir-34-P3b Cmi-Mir-34-P3c Cmi-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636438.1: 15023-15082 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2b KI636438.1: 15023-15082 [-] UCSC Ensembl
Mir-34-P2a KI636438.1: 16309-16368 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CAAUGUUGUAACUGUAAACGCCCCGUUGCUAGGCAGUGUAGUUAGCUGAUUGGUAACCGUUAACUAGCAAUCACUAACCACACAGCCAGGCAAAGAGGUUUGGUUGAAUCGCUCCCUGGA

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Structure

        10          20        30        40        50          
CAAUGUUGUAACUGUAAAC--|  CCG     A   A    A     C      GUAACCG 
                     GCC   UUGCU GGC GUGU GUUAG UGAUUG       \
                     UGG   AACGG CCG CACA CAAUC ACUAAC       U
AGGUCCCUCGCUAAGUUGGUU^  AGA     A   A    C     -      GAUCAAU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-34-P2b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGG -23

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Star sequence

Cmi-Mir-34-P2b_3p*

mirBase accession

None

Sequence

38- AAUCACUAACCACACAGCCAGG -60

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