Mir-34-P2b2

MirGeneDB ID

Xtr-Mir-34-P2b2

Family name

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P3a Xtr-Mir-34-P3b Xtr-Mir-34-P3c Xtr-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b

Node of Origin (locus)

Xenopus

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr7: 75057976-75058030 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b2)

Mir-34-P2b2 chr7: 75057976-75058030 [-] UCSC Ensembl
Mir-34-P2a1 chr7: 75059640-75059700 [-] UCSC Ensembl
Mir-34-P2a2 chr7: 75066361-75066422 [+] UCSC Ensembl
Mir-34-P2b1 chr7: 75066635-75066689 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUAGUCAUCUCUGACAUUGGCCUAGUUACCAGGCAGUGUAGAUAGAUGAUUUGAAAUUAUAUCAAUCACUAACUACACAGCCAGGUGAAAAGGUUUAUAAAGCAAUGUUUGUACA

Get precursor sequence

Structure

        10          20        30        40        50        
AUAGUCAUCUCUGACAUU--|    AG     A   A      A   A     U  AAU 
                    GGCCU  UUACC GGC GUGUAG UAG UGAUU GA   \
                    UUGGA  AGUGG CCG CACAUC AUC ACUAA CU   U
ACAUGUUUGUAACGAAAUAU^    AA     A   A      A   -     -  AUA 
   110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P2b2_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGAUAGAUGAUUUGA -24

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Star sequence

Xtr-Mir-34-P2b2_3p*

mirBase accession

None

Sequence

33- AAUCACUAACUACACAGCCAGG -55

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