MirGeneDB 3.0

19 microRNA genes with node of origin Xenopus
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Xtr-Mir-34-P2a1 xtr-mir-34b-2 MIR-34 GGCAGUG MIMAT0003579 None chr7 75059640 75059700 - Xenopus Bilateria No
Xtr-Mir-34-P2a2 xtr-mir-34b-1 MIR-34 GGCAGUG MIMAT0003579 None chr7 75066361 75066422 + Xenopus Bilateria No
Xtr-Mir-34-P2b1 None MIR-34 GGCAGUG None None chr7 75066635 75066689 + Xenopus Bilateria Unknown 1
Xtr-Mir-34-P2b2 None MIR-34 GGCAGUG None None chr7 75057976 75058030 - Xenopus Bilateria No
Xtr-Mir-142-P2a V xtr-mir-142-1 MIR-142 AUAAAGU MIMAT0003602 MIMAT0003603 chr2 38445593 38445652 + Xenopus Vertebrata 4 No 1
Xtr-Mir-142-P2b V xtr-mir-142-2 MIR-142 AUAAAGU MIMAT0003602 MIMAT0003603 chr2 38446775 38446834 + Xenopus Vertebrata 4 No 1
Xtr-Mir-430-o4 None MIR-430 CUGACAA None None chr1 59518864 59518921 - Xenopus Vertebrata Unknown
Xtr-Mir-430-o6 None MIR-430 AAGUGCU None None chrUn_NW_016683591v1 115715 115774 - Xenopus Vertebrata No 1
Xtr-Mir-430-o7 xtr-mir-428a MIR-430 GGCCUAA None MIMAT0003709 chrUn_NW_016683591v1 115429 115489 - Xenopus Vertebrata No 1
Xtr-Mir-430-o8 xtr-mir-428b MIR-430 AAGUGCU None MIMAT0035362 chrUn_NW_016683591v1 115047 115105 - Xenopus Vertebrata No 1 1
Xtr-Mir-12478 None MIR-12478 GCUGGAG None None chr9 24365337 24365393 + Xenopus Xenopus No
Xtr-Mir-12479 None MIR-12479 CCACUAG None None chr7 62852538 62852594 - Xenopus Xenopus No
Xtr-Mir-12480 None MIR-12480 UCCCCUU None None chr8 75923129 75923189 - Xenopus Xenopus No 1
Xtr-Mir-12481 None MIR-12481 CACCGAU None None chr9 29268997 29269060 + Xenopus Xenopus No 1
Xtr-Mir-12482 None MIR-12482 UUCCUGC None None chr1 98200860 98200928 + Xenopus Xenopus No 1
Xtr-Mir-12483 None MIR-12483 GAAGUGA None None chr3 989597 989652 + Xenopus Xenopus No 1
Xtr-Mir-12484 None MIR-12484 AGGGAUC None None chr6 71836723 71836780 + Xenopus Xenopus No 1
Xtr-Mir-12485 None MIR-12485 GAUCGGA None None chr7 23094426 23094488 - Xenopus Xenopus Unknown
Xtr-Mir-12486 None MIR-12486 UGCUGAC None None chr1 78077403 78077458 - Xenopus Xenopus No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all