| MirGeneDB ID | Xtr-Mir-12481 |
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| Family name |
MIR-12481 (all species) |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Xla-Mir-12481-P1
Xla-Mir-12481-P2
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| Node of Origin (locus) |
Xenopus
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| Node of Origin (family) |
Xenopus
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Genome context
(xenTro9_add) |
chr9: 29268997-29269060 [+]
UCSC
Ensembl
|
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| Seed |
CACCGAU |
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Precursor
(pre-Mir +30nt flank) |
GCUGGUCUUCAAUCGUGGAGUGCCACUUUACCACCGAUAUAUGCACCAAUUAUAGGAUUCAGUAACAUGAUGAUUGGCGCCUAUAUCAGAGGUAAGGUGGCAGUCCUGACAUCAAUCAGCCGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUGGUCUUCAAUCGUG--| G ACC U A UAGGAUUC
GA UGCCACUUUACC GAUAUA GC CCAAUUA A
CU ACGGUGGAAUGG CUAUAU CG GGUUAGU G
GUGCCGACUAACUACAGUC^ G AGA C C AGUACAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Xtr-Mir-12481_5p |
| mirBase accession | None |
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| Sequence |
0- CCACCGAUAUAUGCACCAAUUA -22
Get sequence
|
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| Co-mature sequence |
Xtr-Mir-12481_3p |
| mirBase accession | None |
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| Sequence |
42- AUUGGCGCCUAUAUCAGAGGUA -64
Get sequence
|
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