Mir-430-o8

MirGeneDB ID

Xtr-Mir-430-o8

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-428b

Paralogues

Xtr-Mir-430-o4 Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23 Xtr-Mir-430-o5b Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25 Xtr-Mir-430-o5d1 Xtr-Mir-430-o5d2 Xtr-Mir-430-o5e Xtr-Mir-430-o5f1 Xtr-Mir-430-o5f2 Xtr-Mir-430-o5g Xtr-Mir-430-o5h Xtr-Mir-430-o5j Xtr-Mir-430-o5k1 Xtr-Mir-430-o5k2 Xtr-Mir-430-o5k3 Xtr-Mir-430-o5k4 Xtr-Mir-430-o5k5 Xtr-Mir-430-o5k6 Xtr-Mir-430-o5k7 Xtr-Mir-430-o5k8 Xtr-Mir-430-o5k9 Xtr-Mir-430-o5k10 Xtr-Mir-430-o5k11 Xtr-Mir-430-o5k12 Xtr-Mir-430-o5k13 Xtr-Mir-430-o5k14 Xtr-Mir-430-o5k15 Xtr-Mir-430-o5k16 Xtr-Mir-430-o5k17 Xtr-Mir-430-o5k18 Xtr-Mir-430-o5k19 Xtr-Mir-430-o5k20 Xtr-Mir-430-o5k21 Xtr-Mir-430-o5k22 Xtr-Mir-430-o5k23 Xtr-Mir-430-o5k24 Xtr-Mir-430-o5k25 Xtr-Mir-430-o5k26 Xtr-Mir-430-o5k27 Xtr-Mir-430-o5l1 Xtr-Mir-430-o5l2 Xtr-Mir-430-o5l3 Xtr-Mir-430-o5l4 Xtr-Mir-430-o5l5 Xtr-Mir-430-o5l6 Xtr-Mir-430-o5l7 Xtr-Mir-430-o5l8 Xtr-Mir-430-o5l9 Xtr-Mir-430-o5l10 Xtr-Mir-430-o5l11 Xtr-Mir-430-o5l12 Xtr-Mir-430-o5l13 Xtr-Mir-430-o5l14 Xtr-Mir-430-o5l15 Xtr-Mir-430-o5l16 Xtr-Mir-430-o5l17 Xtr-Mir-430-o5l18 Xtr-Mir-430-o5l19 Xtr-Mir-430-o5m Xtr-Mir-430-o5n1 Xtr-Mir-430-o5n2 Xtr-Mir-430-o6 Xtr-Mir-430-o7 Xtr-Mir-430-P1 Xtr-Mir-430-P3

Orthologues

Dno-Mir-430-P8 Ete-Mir-430-P8 Hsa-Mir-430-P8a Hsa-Mir-430-P8b Mml-Mir-430-P8 Xla-Mir-430-o8a Xla-Mir-430-o8b

Node of Origin (locus)

Xenopus

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chrUn_NW_016683591v1: 115047-115105 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o8)

Mir-430-o8 chrUn_NW_016683591v1: 115047-115105 [-] UCSC Ensembl
Mir-430-o7 chrUn_NW_016683591v1: 115429-115489 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUAGGCCCCGCCUCUCUGGGCUCACAGCAGCCAAACAGAAGCUCUGUCUUGUGACUCUCUAUGAGAAAGUGCUUCUCGUUCGGCUGAUUUGGGCACCGGGAAAUCGUCAGAACCAGC

Get precursor sequence

Structure

        10         20         30         40        50        
CCAUAGGCCCCGCCUCU-    -     CAG     A   -|     U  G   UGUGAC 
                  CUGG GCUCA   CAGCC AAC AGAAGC CU UCU      U
                  GGCC CGGGU   GUCGG UUG UCUUCG GA AGA      C
CGACCAAGACUGCUAAAG    A     UUA     C   C^     U  A   GUAUCU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Em	Em	Em	Em	He

Star sequence

Xtr-Mir-430-o8_5p*

mirBase accession

None

Sequence

0- AGCCAAACAGAAGCUCUGUCU -21

Get sequence

Mature sequence

Xtr-Mir-430-o8_3p

mirBase accession

MIMAT0035362

Sequence

37- AAAGUGCUUCUCGUUCGGCUGA -59

Get sequence

Proposed targets

TargetScanVert: xtr-miR-428b