MirGeneDB ID | Xtr-Mir-430-o5l7 |
Family name |
MIR-430 (all species) |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
Xtr-Mir-430-o4
Xtr-Mir-430-o5a1
Xtr-Mir-430-o5a2
Xtr-Mir-430-o5a3
Xtr-Mir-430-o5a4
Xtr-Mir-430-o5a5
Xtr-Mir-430-o5a6
Xtr-Mir-430-o5a7
Xtr-Mir-430-o5a8
Xtr-Mir-430-o5a9
Xtr-Mir-430-o5a10
Xtr-Mir-430-o5a11
Xtr-Mir-430-o5a12
Xtr-Mir-430-o5a13
Xtr-Mir-430-o5a14
Xtr-Mir-430-o5a15
Xtr-Mir-430-o5a16
Xtr-Mir-430-o5a17
Xtr-Mir-430-o5a18
Xtr-Mir-430-o5a19
Xtr-Mir-430-o5a20
Xtr-Mir-430-o5a21
Xtr-Mir-430-o5a22
Xtr-Mir-430-o5a23
Xtr-Mir-430-o5b
Xtr-Mir-430-o5c1
Xtr-Mir-430-o5c2
Xtr-Mir-430-o5c3
Xtr-Mir-430-o5c4
Xtr-Mir-430-o5c5
Xtr-Mir-430-o5c6
Xtr-Mir-430-o5c7
Xtr-Mir-430-o5c8
Xtr-Mir-430-o5c9
Xtr-Mir-430-o5c10
Xtr-Mir-430-o5c11
Xtr-Mir-430-o5c12
Xtr-Mir-430-o5c13
Xtr-Mir-430-o5c14
Xtr-Mir-430-o5c15
Xtr-Mir-430-o5c16
Xtr-Mir-430-o5c17
Xtr-Mir-430-o5c18
Xtr-Mir-430-o5c19
Xtr-Mir-430-o5c20
Xtr-Mir-430-o5c21
Xtr-Mir-430-o5c22
Xtr-Mir-430-o5c23
Xtr-Mir-430-o5c24
Xtr-Mir-430-o5c25
Xtr-Mir-430-o5d1
Xtr-Mir-430-o5d2
Xtr-Mir-430-o5e
Xtr-Mir-430-o5f1
Xtr-Mir-430-o5f2
Xtr-Mir-430-o5g
Xtr-Mir-430-o5h
Xtr-Mir-430-o5j
Xtr-Mir-430-o5k1
Xtr-Mir-430-o5k2
Xtr-Mir-430-o5k3
Xtr-Mir-430-o5k4
Xtr-Mir-430-o5k5
Xtr-Mir-430-o5k6
Xtr-Mir-430-o5k7
Xtr-Mir-430-o5k8
Xtr-Mir-430-o5k9
Xtr-Mir-430-o5k10
Xtr-Mir-430-o5k11
Xtr-Mir-430-o5k12
Xtr-Mir-430-o5k13
Xtr-Mir-430-o5k14
Xtr-Mir-430-o5k15
Xtr-Mir-430-o5k16
Xtr-Mir-430-o5k17
Xtr-Mir-430-o5k18
Xtr-Mir-430-o5k19
Xtr-Mir-430-o5k20
Xtr-Mir-430-o5k21
Xtr-Mir-430-o5k22
Xtr-Mir-430-o5k23
Xtr-Mir-430-o5k24
Xtr-Mir-430-o5k25
Xtr-Mir-430-o5k26
Xtr-Mir-430-o5k27
Xtr-Mir-430-o5l1
Xtr-Mir-430-o5l2
Xtr-Mir-430-o5l3
Xtr-Mir-430-o5l4
Xtr-Mir-430-o5l5
Xtr-Mir-430-o5l6
Xtr-Mir-430-o5l8
Xtr-Mir-430-o5l9
Xtr-Mir-430-o5l10
Xtr-Mir-430-o5l11
Xtr-Mir-430-o5l12
Xtr-Mir-430-o5l13
Xtr-Mir-430-o5l14
Xtr-Mir-430-o5l15
Xtr-Mir-430-o5l16
Xtr-Mir-430-o5l17
Xtr-Mir-430-o5l18
Xtr-Mir-430-o5l19
Xtr-Mir-430-o5m
Xtr-Mir-430-o5n1
Xtr-Mir-430-o5n2
Xtr-Mir-430-o6
Xtr-Mir-430-o7
Xtr-Mir-430-o8
Xtr-Mir-430-P1
Xtr-Mir-430-P3
|
Orthologues |
Bta-Mir-430-P5
Cja-Mir-430-P5
Cpo-Mir-430-P5
Dno-Mir-430-P5
Eca-Mir-430-P5
Ete-Mir-430-P5
Hsa-Mir-430-P5
Laf-Mir-430-P5
Mml-Mir-430-P5
Ocu-Mir-430-P5
Pab-Mir-430-P5
|
Node of Origin (locus) |
X. tropicalis
|
Node of Origin (family) |
Vertebrata
|
Genome context (xenTro9_add) |
chr3: 133270746-133270809 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-430-o5l7) |
Mir-430-o5a12
chr3: 133221390-133221453 [-]
UCSC
Ensembl
Mir-430-o5k16
chr3: 133221502-133221565 [-]
UCSC
Ensembl
Mir-430-o5a13
chr3: 133222430-133222493 [-]
UCSC
Ensembl
Mir-430-o5c16
chr3: 133222856-133222919 [-]
UCSC
Ensembl
Mir-430-o5k17
chr3: 133222994-133223057 [-]
UCSC
Ensembl
Mir-430-o5a14
chr3: 133224045-133224108 [-]
UCSC
Ensembl
Mir-430-o5l10
chr3: 133224176-133224239 [-]
UCSC
Ensembl
Mir-430-o5c17
chr3: 133224471-133224534 [-]
UCSC
Ensembl
Mir-430-o5k18
chr3: 133224608-133224671 [-]
UCSC
Ensembl
Mir-430-o5g
chr3: 133225643-133225706 [-]
UCSC
Ensembl
Mir-430-o5c18
chr3: 133226070-133226133 [-]
UCSC
Ensembl
Mir-430-o5k19
chr3: 133226208-133226271 [-]
UCSC
Ensembl
Mir-430-o5a15
chr3: 133227259-133227322 [-]
UCSC
Ensembl
Mir-430-o5l11
chr3: 133227390-133227453 [-]
UCSC
Ensembl
Mir-430-o5d1
chr3: 133227685-133227748 [-]
UCSC
Ensembl
Mir-430-o5k20
chr3: 133227823-133227886 [-]
UCSC
Ensembl
Mir-430-o5f1
chr3: 133228887-133228950 [-]
UCSC
Ensembl
Mir-430-o5c19
chr3: 133229305-133229368 [-]
UCSC
Ensembl
Mir-430-o5k21
chr3: 133229443-133229506 [-]
UCSC
Ensembl
Mir-430-o5a16
chr3: 133230494-133230557 [-]
UCSC
Ensembl
Mir-430-o5l19
chr3: 133230632-133230695 [-]
UCSC
Ensembl
Mir-430-o5c20
chr3: 133230917-133230980 [-]
UCSC
Ensembl
Mir-430-o5k22
chr3: 133231055-133231118 [-]
UCSC
Ensembl
Mir-430-o5a17
chr3: 133232106-133232169 [-]
UCSC
Ensembl
Mir-430-o5l18
chr3: 133232237-133232300 [-]
UCSC
Ensembl
Mir-430-o5e
chr3: 133232535-133232598 [-]
UCSC
Ensembl
Mir-430-o5k27
chr3: 133232673-133232736 [-]
UCSC
Ensembl
Mir-430-o5a18
chr3: 133233724-133233787 [-]
UCSC
Ensembl
Mir-430-o5a23
chr3: 133234149-133234212 [-]
UCSC
Ensembl
Mir-430-o5l17
chr3: 133234280-133234343 [-]
UCSC
Ensembl
Mir-430-o5c21
chr3: 133234574-133234637 [-]
UCSC
Ensembl
Mir-430-o5k26
chr3: 133234711-133234774 [-]
UCSC
Ensembl
Mir-430-o5l16
chr3: 133235886-133235949 [-]
UCSC
Ensembl
Mir-430-o5d2
chr3: 133236181-133236244 [-]
UCSC
Ensembl
Mir-430-o5a22
chr3: 133238019-133238082 [-]
UCSC
Ensembl
Mir-430-o5l15
chr3: 133238157-133238220 [-]
UCSC
Ensembl
Mir-430-o5c22
chr3: 133238439-133238502 [-]
UCSC
Ensembl
Mir-430-o5f2
chr3: 133239620-133239683 [-]
UCSC
Ensembl
Mir-430-o5l14
chr3: 133239751-133239814 [-]
UCSC
Ensembl
Mir-430-o5c25
chr3: 133240046-133240109 [-]
UCSC
Ensembl
Mir-430-o5k25
chr3: 133240184-133240247 [-]
UCSC
Ensembl
Mir-430-o5a21
chr3: 133241228-133241291 [-]
UCSC
Ensembl
Mir-430-o5l13
chr3: 133241366-133241429 [-]
UCSC
Ensembl
Mir-430-o5c24
chr3: 133241651-133241714 [-]
UCSC
Ensembl
Mir-430-o5k24
chr3: 133241789-133241852 [-]
UCSC
Ensembl
Mir-430-o5a20
chr3: 133243264-133243327 [-]
UCSC
Ensembl
Mir-430-o5l12
chr3: 133243395-133243458 [-]
UCSC
Ensembl
Mir-430-o5c23
chr3: 133243690-133243753 [-]
UCSC
Ensembl
Mir-430-o5k23
chr3: 133243828-133243891 [-]
UCSC
Ensembl
Mir-430-o5a19
chr3: 133244878-133244941 [-]
UCSC
Ensembl
Mir-430-o5k1
chr3: 133250377-133250440 [+]
UCSC
Ensembl
Mir-430-o5c1
chr3: 133250515-133250578 [+]
UCSC
Ensembl
Mir-430-o5l1
chr3: 133250811-133250874 [+]
UCSC
Ensembl
Mir-430-o5a1
chr3: 133250942-133251005 [+]
UCSC
Ensembl
Mir-430-o5k2
chr3: 133251993-133252056 [+]
UCSC
Ensembl
Mir-430-o5c2
chr3: 133252131-133252194 [+]
UCSC
Ensembl
Mir-430-o5l2
chr3: 133252416-133252479 [+]
UCSC
Ensembl
Mir-430-o5a2
chr3: 133252554-133252617 [+]
UCSC
Ensembl
Mir-430-o5c3
chr3: 133253734-133253797 [+]
UCSC
Ensembl
Mir-430-o5l3
chr3: 133254030-133254093 [+]
UCSC
Ensembl
Mir-430-o5a3
chr3: 133254161-133254224 [+]
UCSC
Ensembl
Mir-430-o5k3
chr3: 133255212-133255275 [+]
UCSC
Ensembl
Mir-430-o5c4
chr3: 133255350-133255413 [+]
UCSC
Ensembl
Mir-430-o5h
chr3: 133257277-133257340 [+]
UCSC
Ensembl
Mir-430-o5b
chr3: 133257735-133257798 [+]
UCSC
Ensembl
Mir-430-o5l4
chr3: 133258031-133258094 [+]
UCSC
Ensembl
Mir-430-o5a4
chr3: 133258162-133258225 [+]
UCSC
Ensembl
Mir-430-o5k4
chr3: 133259213-133259276 [+]
UCSC
Ensembl
Mir-430-o5c5
chr3: 133259351-133259414 [+]
UCSC
Ensembl
Mir-430-o5l5
chr3: 133259638-133259701 [+]
UCSC
Ensembl
Mir-430-o5a5
chr3: 133259769-133259832 [+]
UCSC
Ensembl
Mir-430-o5j
chr3: 133260659-133260722 [+]
UCSC
Ensembl
Mir-430-o5k5
chr3: 133260809-133260872 [+]
UCSC
Ensembl
Mir-430-o5c6
chr3: 133260947-133261010 [+]
UCSC
Ensembl
Mir-430-o5m
chr3: 133261232-133261295 [+]
UCSC
Ensembl
Mir-430-o5a6
chr3: 133261370-133261433 [+]
UCSC
Ensembl
Mir-430-o5k6
chr3: 133262413-133262476 [+]
UCSC
Ensembl
Mir-430-o5c7
chr3: 133262551-133262614 [+]
UCSC
Ensembl
Mir-430-o5n1
chr3: 133262839-133262902 [+]
UCSC
Ensembl
Mir-430-o5k7
chr3: 133263894-133263957 [+]
UCSC
Ensembl
Mir-430-o5k8
chr3: 133264336-133264399 [+]
UCSC
Ensembl
Mir-430-o5c8
chr3: 133264474-133264537 [+]
UCSC
Ensembl
Mir-430-o5k9
chr3: 133265517-133265580 [+]
UCSC
Ensembl
Mir-430-o5c9
chr3: 133265655-133265718 [+]
UCSC
Ensembl
Mir-430-o5n2
chr3: 133265932-133265995 [+]
UCSC
Ensembl
Mir-430-o5a7
chr3: 133266070-133266133 [+]
UCSC
Ensembl
Mir-430-o5k15
chr3: 133267117-133267180 [+]
UCSC
Ensembl
Mir-430-o5c10
chr3: 133267255-133267318 [+]
UCSC
Ensembl
Mir-430-o5a8
chr3: 133267668-133267731 [+]
UCSC
Ensembl
Mir-430-o5k14
chr3: 133268719-133268782 [+]
UCSC
Ensembl
Mir-430-o5c15
chr3: 133268857-133268920 [+]
UCSC
Ensembl
Mir-430-o5l6
chr3: 133269151-133269214 [+]
UCSC
Ensembl
Mir-430-o5k13
chr3: 133270323-133270386 [+]
UCSC
Ensembl
Mir-430-o5c14
chr3: 133270461-133270524 [+]
UCSC
Ensembl
Mir-430-o5l7
chr3: 133270746-133270809 [+]
UCSC
Ensembl
Mir-430-o5a9
chr3: 133270884-133270947 [+]
UCSC
Ensembl
Mir-430-o5k12
chr3: 133271926-133271989 [+]
UCSC
Ensembl
Mir-430-o5c13
chr3: 133272063-133272126 [+]
UCSC
Ensembl
Mir-430-o5l8
chr3: 133272347-133272410 [+]
UCSC
Ensembl
Mir-430-o5a10
chr3: 133272485-133272548 [+]
UCSC
Ensembl
Mir-430-o5k11
chr3: 133273527-133273590 [+]
UCSC
Ensembl
Mir-430-o5c12
chr3: 133273665-133273728 [+]
UCSC
Ensembl
Mir-430-o5k10
chr3: 133301396-133301459 [+]
UCSC
Ensembl
Mir-430-o5c11
chr3: 133301534-133301597 [+]
UCSC
Ensembl
Mir-430-o5l9
chr3: 133301819-133301882 [+]
UCSC
Ensembl
Mir-430-o5a11
chr3: 133301957-133302020 [+]
UCSC
Ensembl
|
Seed |
AAGUGCU |
Precursor (pre-Mir +30nt flank) |
GAAAAGUCACUAUUUGUCCAAUUUGAUAUCACCCAAAACUAAGCCCUCUCUUGUGUUCCCUUGAUGGUCAGAAAGUGCUUCCUGUUUUGGGCGUUAUCGAUUGGAAAAUUCAACUUUUGACGGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAAAGUCACUAUUUGU--- U UCA U--| C C UGUGUUCC
CCAA UUGAUA CCCAAAAC AAGC CU UCU C
GGUU AGCUAU GGGUUUUG UUCG GA AGA U
UGGCAGUUUUCAACUUAAAA - UGC UCC^ U A CUGGUAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Xtr-Mir-430-o5l7_5p* |
mirBase accession | None |
Sequence |
0- ACCCAAAACUAAGCCCUCUCU -21
Get sequence
|
Mature sequence |
Xtr-Mir-430-o5l7_3p |
mirBase accession | None |
Sequence |
41- AAAGUGCUUCCUGUUUUGGGCGU -64
Get sequence
|