Mir-430-o5l9

MirGeneDB ID

Xtr-Mir-430-o5l9

Family name

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-430-o4 Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23 Xtr-Mir-430-o5b Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25 Xtr-Mir-430-o5d1 Xtr-Mir-430-o5d2 Xtr-Mir-430-o5e Xtr-Mir-430-o5f1 Xtr-Mir-430-o5f2 Xtr-Mir-430-o5g Xtr-Mir-430-o5h Xtr-Mir-430-o5j Xtr-Mir-430-o5k1 Xtr-Mir-430-o5k2 Xtr-Mir-430-o5k3 Xtr-Mir-430-o5k4 Xtr-Mir-430-o5k5 Xtr-Mir-430-o5k6 Xtr-Mir-430-o5k7 Xtr-Mir-430-o5k8 Xtr-Mir-430-o5k9 Xtr-Mir-430-o5k10 Xtr-Mir-430-o5k11 Xtr-Mir-430-o5k12 Xtr-Mir-430-o5k13 Xtr-Mir-430-o5k14 Xtr-Mir-430-o5k15 Xtr-Mir-430-o5k16 Xtr-Mir-430-o5k17 Xtr-Mir-430-o5k18 Xtr-Mir-430-o5k19 Xtr-Mir-430-o5k20 Xtr-Mir-430-o5k21 Xtr-Mir-430-o5k22 Xtr-Mir-430-o5k23 Xtr-Mir-430-o5k24 Xtr-Mir-430-o5k25 Xtr-Mir-430-o5k26 Xtr-Mir-430-o5k27 Xtr-Mir-430-o5l1 Xtr-Mir-430-o5l2 Xtr-Mir-430-o5l3 Xtr-Mir-430-o5l4 Xtr-Mir-430-o5l5 Xtr-Mir-430-o5l6 Xtr-Mir-430-o5l7 Xtr-Mir-430-o5l8 Xtr-Mir-430-o5l10 Xtr-Mir-430-o5l11 Xtr-Mir-430-o5l12 Xtr-Mir-430-o5l13 Xtr-Mir-430-o5l14 Xtr-Mir-430-o5l15 Xtr-Mir-430-o5l16 Xtr-Mir-430-o5l17 Xtr-Mir-430-o5l18 Xtr-Mir-430-o5l19 Xtr-Mir-430-o5m Xtr-Mir-430-o5n1 Xtr-Mir-430-o5n2 Xtr-Mir-430-o6 Xtr-Mir-430-o7 Xtr-Mir-430-o8 Xtr-Mir-430-P1 Xtr-Mir-430-P3

Orthologues

Bta-Mir-430-P5 Cja-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Laf-Mir-430-P5 Mml-Mir-430-P5 Ocu-Mir-430-P5 Pab-Mir-430-P5

Node of Origin (locus)

X. tropicalis

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr3: 133301819-133301882 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o5l9)

Mir-430-o5k2 chr3: 133251993-133252056 [+] UCSC Ensembl
Mir-430-o5c2 chr3: 133252131-133252194 [+] UCSC Ensembl
Mir-430-o5l2 chr3: 133252416-133252479 [+] UCSC Ensembl
Mir-430-o5a2 chr3: 133252554-133252617 [+] UCSC Ensembl
Mir-430-o5c3 chr3: 133253734-133253797 [+] UCSC Ensembl
Mir-430-o5l3 chr3: 133254030-133254093 [+] UCSC Ensembl
Mir-430-o5a3 chr3: 133254161-133254224 [+] UCSC Ensembl
Mir-430-o5k3 chr3: 133255212-133255275 [+] UCSC Ensembl
Mir-430-o5c4 chr3: 133255350-133255413 [+] UCSC Ensembl
Mir-430-o5h chr3: 133257277-133257340 [+] UCSC Ensembl
Mir-430-o5b chr3: 133257735-133257798 [+] UCSC Ensembl
Mir-430-o5l4 chr3: 133258031-133258094 [+] UCSC Ensembl
Mir-430-o5a4 chr3: 133258162-133258225 [+] UCSC Ensembl
Mir-430-o5k4 chr3: 133259213-133259276 [+] UCSC Ensembl
Mir-430-o5c5 chr3: 133259351-133259414 [+] UCSC Ensembl
Mir-430-o5l5 chr3: 133259638-133259701 [+] UCSC Ensembl
Mir-430-o5a5 chr3: 133259769-133259832 [+] UCSC Ensembl
Mir-430-o5j chr3: 133260659-133260722 [+] UCSC Ensembl
Mir-430-o5k5 chr3: 133260809-133260872 [+] UCSC Ensembl
Mir-430-o5c6 chr3: 133260947-133261010 [+] UCSC Ensembl
Mir-430-o5m chr3: 133261232-133261295 [+] UCSC Ensembl
Mir-430-o5a6 chr3: 133261370-133261433 [+] UCSC Ensembl
Mir-430-o5k6 chr3: 133262413-133262476 [+] UCSC Ensembl
Mir-430-o5c7 chr3: 133262551-133262614 [+] UCSC Ensembl
Mir-430-o5n1 chr3: 133262839-133262902 [+] UCSC Ensembl
Mir-430-o5k7 chr3: 133263894-133263957 [+] UCSC Ensembl
Mir-430-o5k8 chr3: 133264336-133264399 [+] UCSC Ensembl
Mir-430-o5c8 chr3: 133264474-133264537 [+] UCSC Ensembl
Mir-430-o5k9 chr3: 133265517-133265580 [+] UCSC Ensembl
Mir-430-o5c9 chr3: 133265655-133265718 [+] UCSC Ensembl
Mir-430-o5n2 chr3: 133265932-133265995 [+] UCSC Ensembl
Mir-430-o5a7 chr3: 133266070-133266133 [+] UCSC Ensembl
Mir-430-o5k15 chr3: 133267117-133267180 [+] UCSC Ensembl
Mir-430-o5c10 chr3: 133267255-133267318 [+] UCSC Ensembl
Mir-430-o5a8 chr3: 133267668-133267731 [+] UCSC Ensembl
Mir-430-o5k14 chr3: 133268719-133268782 [+] UCSC Ensembl
Mir-430-o5c15 chr3: 133268857-133268920 [+] UCSC Ensembl
Mir-430-o5l6 chr3: 133269151-133269214 [+] UCSC Ensembl
Mir-430-o5k13 chr3: 133270323-133270386 [+] UCSC Ensembl
Mir-430-o5c14 chr3: 133270461-133270524 [+] UCSC Ensembl
Mir-430-o5l7 chr3: 133270746-133270809 [+] UCSC Ensembl
Mir-430-o5a9 chr3: 133270884-133270947 [+] UCSC Ensembl
Mir-430-o5k12 chr3: 133271926-133271989 [+] UCSC Ensembl
Mir-430-o5c13 chr3: 133272063-133272126 [+] UCSC Ensembl
Mir-430-o5l8 chr3: 133272347-133272410 [+] UCSC Ensembl
Mir-430-o5a10 chr3: 133272485-133272548 [+] UCSC Ensembl
Mir-430-o5k11 chr3: 133273527-133273590 [+] UCSC Ensembl
Mir-430-o5c12 chr3: 133273665-133273728 [+] UCSC Ensembl
Mir-430-o5k10 chr3: 133301396-133301459 [+] UCSC Ensembl
Mir-430-o5c11 chr3: 133301534-133301597 [+] UCSC Ensembl
Mir-430-o5l9 chr3: 133301819-133301882 [+] UCSC Ensembl
Mir-430-o5a11 chr3: 133301957-133302020 [+] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

GAAAAGUCACUAUUUGUCCAAUUUGAUAUCACCCAAAACUAAGCCCUCUCUUGUGUUCCCUUGAUGGUCAGAAAGUGCUUCCUGUUUUGGGCGUUAUCGAUUGGAAAAUUCAACUUUUGACGGU

Get precursor sequence

Structure

        10           20        30        40          50        60
GAAAAGUCACUAUUUGU---    U      UCA        U--|   C  C   UGUGUUCC 
                    CCAA UUGAUA   CCCAAAAC   AAGC CU UCU        C
                    GGUU AGCUAU   GGGUUUUG   UUCG GA AGA        U
UGGCAGUUUUCAACUUAAAA    -      UGC        UCC^   U  A   CUGGUAGU 
  120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-430-o5l9_5p*

mirBase accession

None

Sequence

0- ACCCAAAACUAAGCCCUCUCU -21

Get sequence

Mature sequence

Xtr-Mir-430-o5l9_3p

mirBase accession

None

Sequence

41- AAAGUGCUUCCUGUUUUGGGCGU -64

Get sequence