Mir-430-o4

MirGeneDB ID

Xtr-Mir-430-o4

Family name

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23 Xtr-Mir-430-o5b Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25 Xtr-Mir-430-o5d1 Xtr-Mir-430-o5d2 Xtr-Mir-430-o5e Xtr-Mir-430-o5f1 Xtr-Mir-430-o5f2 Xtr-Mir-430-o5g Xtr-Mir-430-o5h Xtr-Mir-430-o5j Xtr-Mir-430-o5k1 Xtr-Mir-430-o5k2 Xtr-Mir-430-o5k3 Xtr-Mir-430-o5k4 Xtr-Mir-430-o5k5 Xtr-Mir-430-o5k6 Xtr-Mir-430-o5k7 Xtr-Mir-430-o5k8 Xtr-Mir-430-o5k9 Xtr-Mir-430-o5k10 Xtr-Mir-430-o5k11 Xtr-Mir-430-o5k12 Xtr-Mir-430-o5k13 Xtr-Mir-430-o5k14 Xtr-Mir-430-o5k15 Xtr-Mir-430-o5k16 Xtr-Mir-430-o5k17 Xtr-Mir-430-o5k18 Xtr-Mir-430-o5k19 Xtr-Mir-430-o5k20 Xtr-Mir-430-o5k21 Xtr-Mir-430-o5k22 Xtr-Mir-430-o5k23 Xtr-Mir-430-o5k24 Xtr-Mir-430-o5k25 Xtr-Mir-430-o5k26 Xtr-Mir-430-o5k27 Xtr-Mir-430-o5l1 Xtr-Mir-430-o5l2 Xtr-Mir-430-o5l3 Xtr-Mir-430-o5l4 Xtr-Mir-430-o5l5 Xtr-Mir-430-o5l6 Xtr-Mir-430-o5l7 Xtr-Mir-430-o5l8 Xtr-Mir-430-o5l9 Xtr-Mir-430-o5l10 Xtr-Mir-430-o5l11 Xtr-Mir-430-o5l12 Xtr-Mir-430-o5l13 Xtr-Mir-430-o5l14 Xtr-Mir-430-o5l15 Xtr-Mir-430-o5l16 Xtr-Mir-430-o5l17 Xtr-Mir-430-o5l18 Xtr-Mir-430-o5l19 Xtr-Mir-430-o5m Xtr-Mir-430-o5n1 Xtr-Mir-430-o5n2 Xtr-Mir-430-o6 Xtr-Mir-430-o7 Xtr-Mir-430-o8 Xtr-Mir-430-P1 Xtr-Mir-430-P3

Orthologues

Ami-Mir-430-P4 Bta-Mir-430-P4 Cfa-Mir-430-P4 Cja-Mir-430-P4 Cli-Mir-430-P4 Cmi-Mir-430-P4 Cpi-Mir-430-P4 Cpo-Mir-430-P4 Dno-Mir-430-P4 Eca-Mir-430-P4 Ete-Mir-430-P4 Gga-Mir-430-P4 Hsa-Mir-430-P4 Laf-Mir-430-P4 Mdo-Mir-430-P4 Mml-Mir-430-P4 Mmr-Mir-430-P4 Mmu-Mir-430-P4 Oan-Mir-430-P4 Ocu-Mir-430-P4 Pab-Mir-430-P4 Rno-Mir-430-P4 Spt-Mir-430-P4 Sto-Mir-430-P4 Tgu-Mir-430-P4 Xla-Mir-430-o4a Xla-Mir-430-o4b

Node of Origin (locus)

Xenopus

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr1: 59518864-59518921 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o4)

Mir-92-P2a chr1: 59518699-59518759 [-] UCSC Ensembl
Mir-430-o4 chr1: 59518864-59518921 [-] UCSC Ensembl
Mir-430-P1 chr1: 59518998-59519059 [-] UCSC Ensembl
Mir-430-P3 chr1: 59519448-59519507 [-] UCSC Ensembl

Seed

CUGACAA

Precursor
(pre-Mir +30nt flank)

AUUUGUGUUUAGAGAAAAGGAGCCACUUCUGCUGACAACAUGAGGCACAUGCUAAUAAGAGAGUAGUAAGUGCUUCACGUUUUGGCAUAUAUGACUUCUCAUUAUGUACUUGUUCCAG

Get precursor sequence

Structure

        10          20        30        40        50         
AUUUGUGUUUAGAGAAA--|    C  CUUC   UG C   A        A    AAUAA 
                   AGGAG CA    UGC  A AAC UGAGGCAC UGCU     \
                   UCUUC GU    ACG  U UUG ACUUCGUG AUGA     G
GACCUUGUUCAUGUAUUAC^    A  AUAU   GU -   C        A    UGAGA 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-430-o4_5p (predicted)

mirBase accession

None

Sequence

0- GCUGACAACAUGAGGCACAUGCU -23

Get sequence

Star sequence

Xtr-Mir-430-o4_3p* (predicted)

mirBase accession

None

Sequence

36- UAAGUGCUUCACGUUUUGGCAU -58

Get sequence