MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-92-P2a

Family name MIR-92 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-367
Paralogues Xtr-Mir-92-P1a  Xtr-Mir-92-P1c  Xtr-Mir-92-P1d  Xtr-Mir-92-P2c  Xtr-Mir-92-P2d 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cja-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Eca-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gja-Mir-92-P2a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Isc-Mir-92  Laf-Mir-92-P2a  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmr-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Neu-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Pab-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr1: 59518699-59518759 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-92-P2a chr1: 59518699-59518759 [-] UCSC Ensembl
Mir-430-o4 chr1: 59518864-59518921 [-] UCSC Ensembl
Mir-430-P1 chr1: 59518998-59519059 [-] UCSC Ensembl
Mir-430-P3 chr1: 59519448-59519507 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)
GUAAUAGGACUGCGCUGUAGGUGUGCAGUUACUGUUGCCUAUGUGCAAACUCUGUGCUAUAUUGUCUAGAAUUGCACUGUAGCAAUGGUGACUGCCUGCAGAGUGCCAGCUAUACAAACUC
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Structure
        10        20          30        40         50        60
GUAAUAGGACUGCGCUGUAG--|  U              C   -      AC   GUGCUA 
                      GUG GCAGUUACUGUUGC UAU GUGCAA  UCU      U
                      CGU CGUCAGUGGUAACG AUG CACGUU  AGA      A
CUCAAACAUAUCGACCGUGAGA^  C              -   U      A-   UCUGUU 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-92-P2a_5p*

mirBase accessionNone
Sequence
0- ACUGUUGCCUAUGUGCAAACUCU -23
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Mature sequence

Xtr-Mir-92-P2a_3p

mirBase accessionMIMAT0003638
Sequence
39- AAUUGCACUGUAGCAAUGGUGA -61
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Proposed targets TargetScanVert: xtr-miR-367