Mir-92-P1a

MirGeneDB ID

Xtr-Mir-92-P1a

Family name

MIR-92 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-92a-1

Paralogues

Xtr-Mir-92-P1c Xtr-Mir-92-P1d Xtr-Mir-92-P2a Xtr-Mir-92-P2c Xtr-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr2: 120019748-120019807 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GGGAUGGUGGGGAGUUGCCCCUUUCUGUAUAGGUUGGGAUUGGUUGCAAUGCUGUACUAUUUAUGUAGUAUUGCACUUGUCCCGGCCUGUUUAGGAUGCUUGGGAUUAUCAAAUGGUUUA

Get precursor sequence

Structure

        10        20          30        40        50          
GGGAUGGUGGGGAGUUGCCCCU--|    U            U   U        GUACUA 
                        UUCUG AUAGGUUGGGAU GGU GCAAUGCU      \
                        AGGAU UGUCCGGCCCUG UCA CGUUAUGA      U
AUUUGGUAAACUAUUAGGGUUCGU^    U            U   -        UGUAUU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-92-P1a_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUUGGUUGCAAUGCU -23

Get sequence

Mature sequence

Xtr-Mir-92-P1a_3p

mirBase accession

MIMAT0003580

Sequence

38- UAUUGCACUUGUCCCGGCCUGU -60

Get sequence

Proposed targets

TargetScanVert: xtr-miR-92a