MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-92a-1
Paralogues Xtr-Mir-92-P1c  Xtr-Mir-92-P1d  Xtr-Mir-92-P2a  Xtr-Mir-92-P2c  Xtr-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr2: 120019748-120019807 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)		 Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAUGGUGGGGAGUUGCCCCUUUCUGUAUAGGUUGGGAUUGGUUGCAAUGCUGUACUAUUUAUGUAGUAUUGCACUUGUCCCGGCCUGUUUAGGAUGCUUGGGAUUAUCAAAUGGUUUA
Get precursor sequence
Structure
        10        20          30        40        50          
GGGAUGGUGGGGAGUUGCCCCU--|    U            U   U        GUACUA 
                        UUCUG AUAGGUUGGGAU GGU GCAAUGCU      \
                        AGGAU UGUCCGGCCCUG UCA CGUUAUGA      U
AUUUGGUAAACUAUUAGGGUUCGU^    U            U   -        UGUAUU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-92-P1a_5p*
mirBase accessionNone
Sequence 
0- AGGUUGGGAUUGGUUGCAAUGCU -23
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Mature sequence

Xtr-Mir-92-P1a_3p
mirBase accessionMIMAT0003580
Sequence 
38- UAUUGCACUUGUCCCGGCCUGU -60
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Proposed targets TargetScanVert: xtr-miR-92a