Mir-17-P2a

MirGeneDB ID

Xtr-Mir-17-P2a

Family name

MIR-17 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-18a

Paralogues

Xtr-Mir-17-P1a Xtr-Mir-17-P1c Xtr-Mir-17-P2c Xtr-Mir-17-P4a Xtr-Mir-17-P4c Xtr-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr2: 120020263-120020327 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GUGUGUGUGUCCAUAUUGUGCUUUUUGUCCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAAAAGUACUCUUUCGCUGAAACUUGUU

Get precursor sequence

Structure

        10          20         30         40        50        60 
GUGUGUGUGUCCAUAUU--           -  U-|   U   UC   U    A   UGAAGUA 
                   GUGCUUUUUGU CC  AAGG GCA  UAG GCAG UAG       G
                   CAUGAAAAAUA GG  UUCC CGU  AUC CGUC AUC       A
UUGUUCAAAGUCGCUUUCU           C  UC^   U   GA   C    -   UACGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-17-P2a_5p

mirBase accession

MIMAT0003652

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-18a-5p

Star sequence

Xtr-Mir-17-P2a_3p*

mirBase accession

MIMAT0005462

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence

Proposed targets

TargetScanVert: xtr-miR-18a-3p