Mir-17-P2a

MirGeneDB ID

Sha-Mir-17-P2a

Family name

MIR-17 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-17-P1a Sha-Mir-17-P1c Sha-Mir-17-P2c Sha-Mir-17-P4a Sha-Mir-17-P4c Sha-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL849858.1: 3486975-3487039 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-92-P1a GL849858.1: 3486412-3486470 [-] UCSC Ensembl
Mir-19-P2a GL849858.1: 3486529-3486590 [-] UCSC Ensembl
Mir-17-P4a GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Mir-19-P1a GL849858.1: 3486833-3486890 [-] UCSC Ensembl
Mir-17-P2a GL849858.1: 3486975-3487039 [-] UCSC Ensembl
Mir-17-P1a GL849858.1: 3487119-3487179 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

UGUUAUGCUGGUGUCAAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAGUAAUUC

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Structure

        10          20        30          40        50        60 
UGUUAUGCUGGUGUCAAGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CUUAAUGACCUACUUUUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-17-P2a_5p

mirBase accession

None

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

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Star sequence

Sha-Mir-17-P2a_3p*

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

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