Mir-17-P2c

MirGeneDB ID

Sha-Mir-17-P2c

Family name

MIR-17 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-17-P1a Sha-Mir-17-P1c Sha-Mir-17-P2a Sha-Mir-17-P4a Sha-Mir-17-P4c Sha-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL867596.1: 71448-71512 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl
Mir-19-P2c GL867596.1: 71025-71083 [-] UCSC Ensembl
Mir-17-P4c GL867596.1: 71178-71238 [-] UCSC Ensembl
Mir-17-P2c GL867596.1: 71448-71512 [-] UCSC Ensembl
Mir-17-P1c GL867596.1: 71642-71699 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

CCGCCUCGAUCCAUCAACUGUCCCUUGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGCUUAGUAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCCGCCUCCUAGACGACCUGGCCAGC

Get precursor sequence

Structure

        10          20        30          40        50        60 
CCGCCUCGAUCCAUCAACU--  CC         --|  U    C   U     U  UGAUGUA 
                     GU  CUUGUGCUA  AGG GCAU UAG GCAGU AG       G
                     CG  GAACACGGU  UCC CGUA AUC CGUCA UC       C
CGACCGGUCCAGCAGAUCCUC  CC         CU^  U    A   C     -  UAUGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-17-P2c_5p

mirBase accession

None

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Star sequence

Sha-Mir-17-P2c_3p* (predicted)

mirBase accession

None

Sequence

41- ACUGCCCUAAAUGCUCCUUCUGGC -65

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