Mir-92-P2c

MirGeneDB ID

Sha-Mir-92-P2c

Family name

MIR-92 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-363

Paralogues

Sha-Mir-92-P1a Sha-Mir-92-P1c Sha-Mir-92-P1d Sha-Mir-92-P2a Sha-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

GL867596.1: 70445-70509 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl
Mir-19-P2c GL867596.1: 71025-71083 [-] UCSC Ensembl
Mir-17-P4c GL867596.1: 71178-71238 [-] UCSC Ensembl
Mir-17-P2c GL867596.1: 71448-71512 [-] UCSC Ensembl
Mir-17-P1c GL867596.1: 71642-71699 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AAGGGGCCGAGCUGGCUGGUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUAAGUUUAGUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAAGACCUUUUGCAGUGGCAGCUUG

Get precursor sequence

Structure

        10         20         30        40        50        60  
AAGGGGCCGAGCUGGCU-    -|  U   GU         CA  A         GAUAAGUU 
                  GGUU UGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                  CCAG ACG CAA  GUCUACCUA  GC ACGUUAAAA        A
GUUCGACGGUGACGUUUU    A^  C   AU         UG  -         AGAGGAUG 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-92-P2c_5p*

mirBase accession

MIMAT0022831

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

Get sequence

Mature sequence

Sha-Mir-92-P2c_3p

mirBase accession

None

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

Get sequence