MirGeneDB ID | Sha-Mir-92-P1d |
Family name |
MIR-92 (all species) |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-92-P1a
Sha-Mir-92-P1c
Sha-Mir-92-P2a
Sha-Mir-92-P2c
Sha-Mir-92-P2d
|
Orthologues |
Ami-Mir-92-P1d
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1d
Cel-Mir-92
Cfa-Mir-92-P1d
Cja-Mir-92-P1d
Cmi-Mir-92-P1d
Cpi-Mir-92-P1d
Cpo-Mir-92-P1d
Dno-Mir-92-P1d
Dre-Mir-92-P1d
Eca-Mir-92-P1d
Esc-Mir-92
Ete-Mir-92-P1d
Gja-Mir-92-P1d
Gsp-Mir-92
Hmi-Mir-92
Hsa-Mir-92-P1d
Isc-Mir-92
Laf-Mir-92-P1d
Lch-Mir-92-P1d
Loc-Mir-92-P1d
Mal-Mir-92-P1d
Mdo-Mir-92-P1d
Mml-Mir-92-P1d
Mmr-Mir-92-P1d
Mmu-Mir-92-P1d
Mun-Mir-92-P1d
Oan-Mir-92-P1d
Obi-Mir-92
Ocu-Mir-92-P1d
Pab-Mir-92-P1d
Pbv-Mir-92-P1d
Rno-Mir-92-P1d
Sme-Mir-92
Spt-Mir-92-P1d
Sto-Mir-92-P1d
Tgu-Mir-92-P1d
Xla-Mir-92-P1d1
Xla-Mir-92-P1d2
Xtr-Mir-92-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
AFEY01015387_Mir-92-P3: 13715-13776 [-]
UCSC
Ensembl
|
Seed |
AUUGCAC |
Precursor (pre-Mir +30nt flank) |
AGUGGGGACCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCUCCGGCCCCCCGGCCUCCCCCUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUGGGGACCCCGGGCC--| C G GA C GUUCUU
CCGGG GGGC GGAGG CGGGACG GGUGCAGUGUU U
GGCCU CCCG CCUCC GCCCUGC UCACGUUAUAA C
ACUCCCCCUCCGGCCCCCC^ C G G- - CCGCCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sha-Mir-92-P1d_5p* |
mirBase accession | None |
Sequence |
0- AGGGACGGGACGCGGUGCAGUGUU -24
Get sequence
|
Mature sequence |
Sha-Mir-92-P1d_3p |
mirBase accession | None |
Sequence |
40- UAUUGCACUCGUCCCGGCCUCC -62
Get sequence
|