MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-92-P1d

Family name MIR-92 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-92b
Paralogues Ami-Mir-92-P1a  Ami-Mir-92-P1c  Ami-Mir-92-P2a  Ami-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cja-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Eca-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1d  Isc-Mir-92  Laf-Mir-92-P1d  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmr-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pab-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 manual_Ami-Mir-92-P3: 58-119 [+] UCSC
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GGCCGCGGCCAGCGCCUCCGGGGCGGCGGGAGGGCCGGGAUGCGGUGCAGUGUUGUGCGUCUCCUACCAAUAUUGCACUCGUCCCGGCCUCCCGCCGCCCCGGGCUCCUCUACGCCCGCACG
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Structure
        10          20        30        40        50        60 
GGCCGCGGCCAGCGCCU--|               G        C           GUGCGU 
                   CCGGGGCGGCGGGAGG CCGGGAUG GGUGCAGUGUU      C
                   GGCCCCGCCGCCCUCC GGCCCUGC UCACGUUAUAA      U
GCACGCCCGCAUCUCCUCG^               -        -           CCAUCC 
120       110       100        90         80         70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Ami-Mir-92-P1d_5p*
mirBase accessionMIMAT0038103
Sequence 
0- AGGGCCGGGAUGCGGUGCAGUGUU -24
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Mature sequence

Ami-Mir-92-P1d_3p
mirBase accessionMIMAT0038103
Sequence 
40- UAUUGCACUCGUCCCGGCCUCC -62
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