Mir-92-P1d

MirGeneDB ID

Eca-Mir-92-P1d

Family name

MIR-92 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-92b

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P2a Eca-Mir-92-P2c Eca-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009152.1: 39317361-39317423 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GAGCGGGAUCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCUUCGGCCCCCCGGCCUCCCCCUCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAGCGGGAUCCCGGGCC--|    C    G     GA       C           GUUCUUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCUU CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
ACUCCCCCUCCGGCCCCCC^    C    G     G-       -           CCGCCCC 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

Get sequence

Mature sequence

Eca-Mir-92-P1d_3p

mirBase accession

MIMAT0012966

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

Get sequence