Mir-92-o1

MirGeneDB ID

Bfl-Mir-92-o1

Family name

MIR-92 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

Paralogues

Bfl-Mir-92-o2 Bfl-Mir-92-o3 Bfl-Mir-92-o4 Bfl-Mir-92-o5 Bfl-Mir-92-o6 Bfl-Mir-92-o7 Bfl-Mir-92-o8

Orthologues

Aca-Mir-92-P1a Aca-Mir-92-P1c Ami-Mir-92-P1a Ami-Mir-92-P1c Ami-Mir-92-P1d Asu-Mir-92 Bla-Mir-92-o1 Bta-Mir-92-P1a Bta-Mir-92-P1c Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1a Cfa-Mir-92-P1c Cfa-Mir-92-P1d Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P1d Cli-Mir-92-P1a Cli-Mir-92-P1c Cmi-Mir-92-P1a Cmi-Mir-92-P1b Cmi-Mir-92-P1c Cmi-Mir-92-P1d Cpi-Mir-92-P1a Cpi-Mir-92-P1c Cpi-Mir-92-P1d Cpo-Mir-92-P1a Cpo-Mir-92-P1c Cpo-Mir-92-P1d Dno-Mir-92-P1a Dno-Mir-92-P1c Dno-Mir-92-P1d Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Dre-Mir-92-P1d Ebu-Mir-92-P1e Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1a Ete-Mir-92-P1c Ete-Mir-92-P1d Gga-Mir-92-P1a Gga-Mir-92-P1c Gja-Mir-92-P1a Gja-Mir-92-P1c Gja-Mir-92-P1d Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Hsa-Mir-92-P1c Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1a Laf-Mir-92-P1c Laf-Mir-92-P1d Lch-Mir-92-P1a Lch-Mir-92-P1d Loc-Mir-92-P1a Loc-Mir-92-P1d Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mal-Mir-92-P1d Mdo-Mir-92-P1a Mdo-Mir-92-P1c Mdo-Mir-92-P1d Mml-Mir-92-P1a Mml-Mir-92-P1c Mml-Mir-92-P1d Mmr-Mir-92-P1a Mmr-Mir-92-P1c Mmr-Mir-92-P1d Mmu-Mir-92-P1a Mmu-Mir-92-P1c Mmu-Mir-92-P1d Mun-Mir-92-P1a Mun-Mir-92-P1c Mun-Mir-92-P1d Neu-Mir-92-P1c Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Oan-Mir-92-P1c Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1a Ocu-Mir-92-P1c Ocu-Mir-92-P1d Pab-Mir-92-P1a Pab-Mir-92-P1c Pab-Mir-92-P1d Pbv-Mir-92-P1a Pbv-Mir-92-P1c Pbv-Mir-92-P1d Pma-Mir-92-P1g Pma-Mir-92-P1h Pma-Mir-92-P1o1 Rno-Mir-92-P1a Rno-Mir-92-P1c Rno-Mir-92-P1d Sha-Mir-92-P1a Sha-Mir-92-P1c Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1a Spt-Mir-92-P1c Spt-Mir-92-P1d Sto-Mir-92-P1a Sto-Mir-92-P1b Sto-Mir-92-P1c Sto-Mir-92-P1d Tgu-Mir-92-P1a Tgu-Mir-92-P1c Tgu-Mir-92-P1d Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1a Xtr-Mir-92-P1c Xtr-Mir-92-P1d

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049981.1: 15364646-15364704 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-92-o1)

Mir-92-o1 NC_049981.1: 15364646-15364704 [+] UCSC
Mir-92-o2 NC_049981.1: 15365141-15365198 [+] UCSC

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UGAAGCAACACAUAUUGUGCCCUGUCAGACAGGUCAGGAUUGGUGGCAAUGCUUAUAAACAUGCCAGUAUUGCACUUGUCCCGGCCUUUCUGAUUGGUUAAAAGUCUGCUGUCUAUCCU

Get precursor sequence

Structure

        10           20        30        40        50         
UGAAGCAACACAUAUUGU---|  CU      C     A    U    G       UAUAA 
                     GCC  GUCAGA AGGUC GGAU GGUG CAAUGCU     A
                     UGG  UAGUCU UCCGG CCUG UCAC GUUAUGA     C
UCCUAUCUGUCGUCUGAAAAU^  U-      U     C    U    -       CCGUA 
       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bfl-Mir-92-o1_5p*

mirBase accession

None

Sequence

0- AGGUCAGGAUUGGUGGCAAUGCU -23

Get sequence

Mature sequence

Bfl-Mir-92-o1_3p

mirBase accession

None

Sequence

37- UAUUGCACUUGUCCCGGCCUUU -59

Get sequence