Mir-92-P1c

MirGeneDB ID

Hsa-Mir-92-P1c

Family name

MIR-92 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-92a-2

Paralogues

Hsa-Mir-92-P1a Hsa-Mir-92-P1d Hsa-Mir-92-P2a Hsa-Mir-92-P2c Hsa-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chrX: 134169544-134169604 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UAUCUCCAGCACUCAUGCCCAUUCAUCCCUGGGUGGGGAUUUGUUGCAUUACUUGUGUUCUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUUAUCGUCUUCUU

Get precursor sequence

Structure

        10          20        30        40        50        60
UAUCUCCAGCACUCAUGC--| A   A   C     G     UU  U   U    UGUGUU 
                    CC UUC UCC UGGGU GGGAU  GU GCA UACU      C
                    GG AAG AGG GUCCG CCCUG  CA CGU AUGA      U
UUCUUCUGCUAUUUUUAGGA^ A   A   U     G     UU  -   U    AAUAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-92-P1c_5p*

mirBase accession

MIMAT0004508

Sequence

0- GGGUGGGGAUUUGUUGCAUUACU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004508
TargetScanVert: hsa-miR-92a-2-5p
TargetMiner: hsa-miR-92a-2-5p
miRDB: MIMAT0004508

Mature sequence

Hsa-Mir-92-P1c_3p

mirBase accession

MIMAT0000092

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000092
TargetScanVert: hsa-miR-92a-3p
TargetMiner: hsa-miR-92a-3p
miRDB: MIMAT0000092