MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-92a-2
Paralogues Pbv-Mir-92-P1a  Pbv-Mir-92-P1d  Pbv-Mir-92-P2c 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958055.1: 286-347 [-]
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c KE958055.1: 115-179 [-]
Mir-92-P1c KE958055.1: 286-347 [-]
Mir-17-P4c KE958055.1: 600-662 [-]
Mir-17-P2c KE958055.1: 3575-3639 [-]
Mir-17-P1c KE958055.1: 3752-3809 [-]
Precursor
(pre-Mir +30nt flank)
CGCAAAGGCAGAGAGAGCUCCUUCCUCCGUGGGUUGGGAUUUGUUGUAUUACUCGGAGAUCUCUGAACAGUAUUGCACUUGUCCCGGCCUGUGGAGGACCGGGGAGAAUCGACCUGGGCAGA
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Structure
        10         20         30        40        50        60 
CGCAAAGGCAGAGAGAG-    U-|      UG         UU  U   U    CGGAGAU 
                  CUCC  UCCUCCG  GGUUGGGAU  GU GUA UACU       \
                  GGGG  AGGAGGU  CCGGCCCUG  CA CGU AUGA       C
AGACGGGUCCAGCUAAGA    CC^      GU         UU  -   U    CAAGUCU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-92-P1c_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGUUGGGAUUUGUUGUAUUACU -23
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Mature sequence

Pbv-Mir-92-P1c_3p

mirBase accessionMIMAT0038889
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
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