| MirGeneDB ID | Spt-Mir-92-P1c |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-92-P1a Spt-Mir-92-P1d Spt-Mir-92-P2a Spt-Mir-92-P2c |
| Orthologues | Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25208662-25208723 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-92-P1c) |
Mir-17-P1c
QEPC01011901.1: 25207986-25208045 [+]
UCSC
Ensembl
Mir-17-P2c QEPC01011901.1: 25208168-25208232 [+] UCSC Ensembl Mir-17-P4c QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl Mir-19-P2c QEPC01011901.1: 25208490-25208549 [+] UCSC Ensembl Mir-92-P1c QEPC01011901.1: 25208662-25208723 [+] UCSC Ensembl Mir-92-P2c QEPC01011901.1: 25208800-25208864 [+] UCSC Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
UCCCUGGCUGCUUUGCACUGGUUUCUCCAUGGGUGGGGAUUUGUUGCAUUACUUGUCGCUGUGUCUAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAGGAGGACUUAUCUUCAGCUCGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCCUGGCUGCUUUGCA---| GG G UU U U UGUCGCU CU UUUCUCCAUGGGU GGGAU GU GCA UACU \ GG AAGGAGGUGUCCG CCCUG CA CGU AUGA G GGCUCGACUUCUAUUCAGGA^ A- G UU - U GAUCUGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Spt-Mir-92-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGUGGGGAUUUGUUGCAUUACU -23
Get sequence
|
| Mature sequence | Spt-Mir-92-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UAUUGCACUUGUCCCGGCCUGU -62
Get sequence
|
