| MirGeneDB ID | Spt-Mir-17-P2c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-17-P1a Spt-Mir-17-P1c Spt-Mir-17-P2a Spt-Mir-17-P4a Spt-Mir-17-P4c |
| Orthologues | Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25208168-25208232 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P2c) |
Mir-17-P1c
QEPC01011901.1: 25207986-25208045 [+]
UCSC
Ensembl
Mir-17-P2c QEPC01011901.1: 25208168-25208232 [+] UCSC Ensembl Mir-17-P4c QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl Mir-19-P2c QEPC01011901.1: 25208490-25208549 [+] UCSC Ensembl Mir-92-P1c QEPC01011901.1: 25208662-25208723 [+] UCSC Ensembl Mir-92-P2c QEPC01011901.1: 25208800-25208864 [+] UCSC Ensembl |
| Seed | AAGGUGC |
| Precursor (pre-Mir +30nt flank) |
UCCAAUCUGCAUUGCAAAUGGCCCUCGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUGAAUGCUCCUUCUGGCAUGAGCUCCUCGCUGUGCGUCUUGCUGCACGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCAAUCUGCAUUGCAAAU-- CC --| U C U U UGAAGUA GG CUCGUGCUA AGG GCAU UAG GCAGU AG G CC GAGUACGGU UCC CGUA GUC CGUCA UC C CACGUCGUUCUGCGUGUCGCU UC CU^ U A C - UAAGAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-17-P2c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
|
| Star sequence | Spt-Mir-17-P2c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- UACUGCCCUGAAUGCUCCUUCUGGC -65
Get sequence
|
