Mir-17-P2c

MirGeneDB ID

Eca-Mir-17-P2c

Family name

MIR-17 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-18b

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P4a Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110759029-110759091 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GAGCUGUUCCUCAUAAUAUGCCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUACUCUCCAGCAUUAAAA

Get precursor sequence

Structure

        10        20        30          40        50        60 
GAGCUGUUCCUCAUAAUAU  CU         --|  U    C   U     U  UGAAGCA 
                   GC  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                   CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAUUACGACCUCUCAUC  UC         CU^  C    A   C     -  UAAGAUU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-17-P2c_5p

mirBase accession

MIMAT0013200

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Star sequence

Eca-Mir-17-P2c_3p* (predicted)

mirBase accession

None

Sequence

41- ACUGCCCUAAAUGCCCCUUCUG -63

Get sequence